Evidence map›Paper›PMID 16356268›Full record

ArticleGenome biology2005

A low-cost open-source SNP genotyping platform for association mapping applications.

Stuart J Macdonald, Tomi Pastinen, Anne Genissel, Theodore W Cornforth, Anthony D Long

Abstract read
In one paragraph

Article in Genome biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
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  5. Article
  6. Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Stuart J MacdonaldDepartment of Ecology and Evolutionary Biology, University of California Irvine, CA 92697-2525, USA. sjm@uci.edu
Tomi Pastinen
Anne Genissel
Theodore W Cornforth
Anthony D Long

Funding

USING DISEQUILIBRIUM MAPPING TO DISSECT COMPLEX TRAITSR01GM058564 · NIGMS · UNIVERSITY OF CALIFORNIA IRVINE · PI LONG, ANTHONY DOUGLAS · 1999 to 2003
$536k
NIGMS NIH HHS GM58564NIGMS NIH HHS R01 GM058564
6 · The paper itself

Abstract

Association mapping aimed at identifying DNA polymorphisms that contribute to variation in complex traits entails genotyping a large number of single-nucleotide polymorphisms (SNPs) in a very large panel of individuals. Few technologies, however, provide inexpensive high-throughput genotyping. Here, we present an efficient approach developed specifically for genotyping large fixed panels of diploid individuals. The cost-effective, open-source nature of our methodology may make it particularly attractive to those working in nonmodel systems.

Indexed as

AnimalsChromosome MappingCost-Benefit AnalysisDrosophila melanogasterGenome, InsectGenotypeOligonucleotidesPolymorphism, Single NucleotideSensitivity and SpecificityOligonucleotides

Identifiers

PMID16356268
PMCPMC1414086

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.