Evidence map›Paper›PMID 16352834›Full record

ArticleJournal of bacteriology2006

CcpC-dependent regulation of citB and lmo0847 in Listeria monocytogenes.

Hyun-Jin Kim, Meghna Mittal, Abraham L Sonenshein

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Hyun-Jin KimDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, 136 Harrison Avenue, Boston, MA 02111, USA.
Meghna Mittal
Abraham L Sonenshein
Tufts University · US

Funding

REGULATION OF NITROGEN METABOLISM IN BACILLUS SUBTILISR01GM036718 · NIGMS · TUFTS UNIVERSITY BOSTON · PI BELITSKY, BORIS R, SONENSHEIN, ABRAHAM LINCOLN · 1986 to 2011
$3.2M
NIGMS NIH HHS GM 036718NIGMS NIH HHS R01 GM036718
6 · The paper itself

Abstract

In Bacillus subtilis, the catabolite control protein C (CcpC) plays a critical role in regulating the genes encoding the enzymes of the tricarboxylic acid branch of the Krebs citric acid cycle. A gene encoding a potential CcpC homolog and two potential target genes were identified in the Listeria monocytogenes genome. In vitro gel mobility shift assays and DNase I footprinting experiments showed that L. monocytogenes CcpC (CcpC(Lm)) interacts with the promoter regions of citB(Lm) (the gene that is likely to encode aconitase) and lmo0847 (encoding a possible glutamine transporter) and that citrate is a specific inhibitor of this interaction. To study in vivo promoter activity, a new lacZ reporter system was developed. This system allows stable integration into the chromosome of a promoter region transcriptionally fused to a promoterless lacZ gene at a nonessential, ectopic locus. Analysis of strains carrying a citB(Lm)-lacZ or lmo0847-lacZ fusion revealed that CcpC(Lm) represses citB(Lm) and lmo0847 in media containing an excess of glucose and glutamine. In addition, regulation of citB(Lm) expression in rich medium was growth phase dependent; during exponential growth phase, expression was very low even in the absence of CcpC(Lm), but a higher level of citB(Lm) expression was induced in stationary phase, suggesting the involvement of another, as yet unidentified regulatory factor.

Indexed as

Gene Expression Regulation, BacterialAconitate HydrataseAnimalsATP-Binding Cassette TransportersBacterial ProteinsBase SequenceCitratesCulture MediaDNA-Binding ProteinsDNA FootprintingGlucoseGlutamineListeria monocytogenesMolecular Sequence DataRepressor ProteinsAconitate HydrataseATP-Binding Cassette TransportersBacterial Proteinscatabolite control proteins, bacteriaCitratesCulture MediaDNA-Binding ProteinsGlucoseGlutamineRepressor Proteins

Identifiers

PMID16352834
PMCPMC1317608
OpenAlexW2146483212

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.