Evidence map›Paper›PMID 16352828›Full record

ArticleJournal of bacteriology2006

Hfq is a regulator of F-plasmid TraJ and TraM synthesis in Escherichia coli.

William R Will, Laura S Frost

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Small RNA GadY inFrontiers in cellular and infection microbiology · 2024
    Article
  4. Review
  5. Review
  6. Review
  7. Small RNA-based feedforward loop with AND-gate logic regulates extrachromosomal DNA transfer in Salmonella.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  8. Article
  9. Article
  10. Article
  11. Hfq and its constellation of RNA.Nature reviews. Microbiology · 2011
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Space flight alters bacterial gene expression and virulence and reveals a role for global regulator Hfq.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

William R WillCW405 Biological Sciences Building, Department of Biological Sciences, University of Alberta, Edmonton, Alberta T6G 2E9, Canada.
Laura S Frost
University of Alberta · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The F plasmid of Escherichia coli allows horizontal DNA transfer between an F(+) donor cell and an F(-) recipient. Expression of the transfer genes is tightly controlled by a number of factors, including the following plasmid-encoded regulatory proteins: TraJ, the primary activator of the 33-kb tra operon, and the autoregulators TraM and TraY. Here, we demonstrate that the host RNA binding protein, Hfq, represses TraJ and TraM synthesis by destabilizing their respective mRNAs. Mating assays and immunoblot analyses for TraM and TraJ showed that transfer efficiency and protein levels increased in host cells containing a disruption in hfq compared to wild-type cells in stationary phase. The stability of transcripts containing a putative Hfq binding site located in the intergenic untranslated region between traM and traJ was increased in hfq mutant donor cells, suggesting that Hfq destabilizes these transcripts. Electrophoretic mobility shift assays demonstrated that Hfq specifically binds this region but not the antisense RNA, FinP, encoded on the opposite strand. Together, these findings indicate that Hfq regulates traM and traJ transcript stability by a mechanism separate from FinOP-mediated repression.

Indexed as

Conjugation, GeneticGene Expression Regulation, Bacterial5' Untranslated RegionsBacterial Outer Membrane ProteinsBacterial ProteinsBase SequenceEscherichia coliEscherichia coli ProteinsF FactorHost Factor 1 ProteinMolecular Sequence DataRepressor ProteinsRNA, MessengerTranscription, Genetic5' Untranslated RegionsBacterial Outer Membrane ProteinsBacterial ProteinsEscherichia coli ProteinsHfq protein, E coliHost Factor 1 ProteinRepressor ProteinsRNA, MessengerTraJ protein, E coliTraM protein, bacterial

Identifiers

PMID16352828
PMCPMC1317594
OpenAlexW2138142090

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.