Evidence map›Paper›PMID 16352560›Full record

ArticleJournal of virology2006

Expanded tropism and altered activation of a retroviral glycoprotein resistant to an entry inhibitor peptide.

Sean M Amberg, Robert C Netter, Graham Simmons, Paul Bates

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.2field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Review
  3. Retroviral host range extension is coupled with Env-activating mutations resulting in receptor-independent entry.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  4. On board a raft or boat in the retrovirus sea.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Sean M AmbergDepartment of Microbiology, University of Pennsylvania School of Medicine, 225 Johnson Pavilion, 3610 Hamilton Walk, Philadelphia, PA 19104-6076, USA.
Robert C Netter
Graham Simmons
Paul Bates
University of Pennsylvania · US

Funding

TRAINING PROGRAM IN CELL AND MOLECULAR BIOLOGYT32GM007229 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BARTOLOMEI, MARISA S. · 1985 to 2023
$14.0M
CHARACTERIZATION OF EBOLA VIRAL GYLCOPROTEINSR01AI043455 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI BATES, PAUL F · 1999 to 2003
$1.0M
FUNCTIONAL ANALYSIS OF RSV ENVELOPE GLYCOPROTEINR01CA076256 · NCI · UNIVERSITY OF PENNSYLVANIA · PI BATES, PAUL F · 1998 to 2002
$787k
Functional and Structural Studies of Env-mediated FusionF32AI050341 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI AMBERG, SEAN M · 2001 to 2003
$75k
NCI NIH HHS R01 CA076256NCI NIH HHS R01-CA76256NIAID NIH HHS F32 AI050341NIAID NIH HHS F32-AI050341NIAID NIH HHS R01 AI043455NIAID NIH HHS R01-AI43455NIGMS NIH HHS T32 GM007229NIGMS NIH HHS T32-GM07229
6 · The paper itself

Abstract

The envelope of class I viruses can be a target for potent viral inhibitors, such as the human immunodeficiency virus type 1 (HIV-1) inhibitor enfuvirtide, which are derived from the C-terminal heptad repeat (HR2) of the transmembrane (TM) subunit. Resistance to an HR2-based peptide inhibitor of a model retrovirus, subgroup A of the Avian Sarcoma and Leukosis Virus genus (ASLV-A), was studied by examining mutants derived by viral passage in the presence of inhibitor. Variants with reduced sensitivity to inhibitor were readily selected in vitro. Sensitivity determinants were identified for 13 different isolates, all of which mapped to the TM subunit. These determinants were identified in two regions: (i) the N-terminal heptad repeat (HR1) and (ii) the N-terminal segment of TM, between the subunit cleavage site and the fusion peptide. The latter class of mutants identified a region outside of the predicted HR2-binding site that can significantly alter sensitivity to inhibitor. A subset of the HR1 mutants displayed the unanticipated ability to infect nonavian cells. This expanded tropism was associated with increased efficiency of envelope triggering by soluble receptor at low temperatures, as measured by protease sensitivity of the surface subunit (SU) of envelope. In addition, expanded tropism was linked for the most readily triggered mutants with increased sensitivity to neutralization by SU-specific antiserum. These observations depict a class of HR2 peptide-selected mutations with a reduced activation threshold, thereby allowing the utilization of alternative receptors for viral entry.

Indexed as

Avian Leukosis VirusAvian Sarcoma VirusesCell LinePeptidesRepetitive Sequences, Amino AcidTropismViral Envelope ProteinsViral Fusion ProteinsPeptidesViral Envelope ProteinsViral Fusion Proteins

Identifiers

PMID16352560
PMCPMC1317511
OpenAlexW2153087390

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.