Evidence map›Paper›PMID 16344483›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

Structure of the streptococcal cell wall C5a peptidase.

C Kent Brown, Zu-Yi Gu, Yury V Matsuka, Sai S Purushothaman, Laurie A Winter, P Patrick Cleary, Stephen B Olmsted, Douglas H Ohlendorf, Cathleen A Earhart

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Structure, dynamics and immunogenicity of a catalytically inactive CComputational and structural biotechnology journal · 2020
    Article
  11. Modeled Structure of the Cell Envelope Proteinase ofFrontiers in bioengineering and biotechnology · 2020
    Article
  12. Review
  13. The Pathogenic Factors from Oral Streptococci for Systemic Diseases.International journal of molecular sciences · 2019
    Review
  14. The Streptococcus agalactiae complement interfering protein combines multiple complement-inhibitory mechanisms by interacting with both C4 and C3 ligands.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
  15. Article
  16. Frontiers in immunology · 2018
    Review
  17. Progress toward a group B streptococcal vaccine.Human vaccines & immunotherapeutics · 2018
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

C Kent BrownDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, MN 55455, USA.
Zu-Yi Gu
Yury V Matsuka
Sai S Purushothaman
Laurie A Winter
P Patrick Cleary
Stephen B Olmsted
Douglas H Ohlendorf
Cathleen A Earhart
Pearl River Community College · USUniversity of Minnesota · US

Funding

Acquired deficiency of innate immunity (ficolin-2) among elderly adultsR01AG050607 · NIA · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI NAHM, MOON H. · 2015 to 2019
$1.6M
Structural Biology of Gram Positive Virulence FactorsR01AI057585 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI EARHART, CATHLEEN A · 2004 to 2008
$1.2M
STREPTOCOCCAL INACTIVATOR IN HUMAN CHEMOATTRACTANTSR01AI020016 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI CLEARY, PAUL PATRICK · 1985 to 2006
$1.1M
NIAID NIH HHS R01 AI020016NIAID NIH HHS R01 AI057585NIAID NIH HHS R01 AI20016NIAID NIH HHS R01 AI50607NIAID NIH HHS R01 AI57585NIA NIH HHS R01 AG050607
6 · The paper itself

Abstract

The structure of a cell surface enzyme from a gram-positive pathogen has been determined to 2-A resolution. Gram-positive pathogens have a thick cell wall to which proteins and carbohydrate are covalently attached. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. Structural analysis of a 949-residue fragment of the [D130A,S512A] mutant of SCP from group B Streptococcus (S. agalactiae, SCPB) revealed SCPB is composed of five distinct domains. The N-terminal subtilisin-like protease domain has a 134-residue protease-associated domain inserted into a loop between two beta-strands. This domain also contains one of two Arg-Gly-Asp (RGD) sequences found in SCPB. At the C terminus are three fibronectin type III (Fn) domains. The second RGD sequence is located between Fn1 and Fn2. Our analysis suggests that SCP binding to integrins by the RGD motifs may stabilize conformational changes required for substrate binding.

Indexed as

Adhesins, BacterialAmino Acid MotifsAmino Acid SequenceCell WallCrystallography, X-RayEndopeptidasesModels, MolecularProtein BindingProtein Structure, QuaternaryProtein Structure, TertiaryStreptococcus agalactiaeAdhesins, BacterialC5a peptidaseEndopeptidases

Identifiers

PMID16344483
PMCPMC1317908
OpenAlexW2135032011

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.