Evidence map›Paper›PMID 16339882›Full record

ArticleBiophysical journal2006

Bistability in apoptosis: roles of bax, bcl-2, and mitochondrial permeability transition pores.

E Z Bagci, Y Vodovotz, T R Billiar, G B Ermentrout, I Bahar

Abstract read
In one paragraph

Article in Biophysical journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 154 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
154citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

154 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  14. Basal State Calibration of a Chemical Reaction Network Model for Autophagy.International journal of molecular sciences · 2024
    Article
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  16. Review
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  18. Article
  19. Research Progress on the Anti-Cancer Effects ofMolecules (Basel, Switzerland) · 2024
    Review
  20. Article

94 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

E Z BagciDepartment of Computational Biology, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania 15261, USA.
Y Vodovotz
T R Billiar
G B Ermentrout
I Bahar

Funding

Multiscale Dynamics of Cell Cycle Control and ApoptosisP20GM065805 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BAHAR, IVET · 2003 to 2005
$1.0M
NIGMS NIH HHS 1P20-GM065805NIGMS NIH HHS P20 GM065805
6 · The paper itself

Abstract

We propose a mathematical model for mitochondria-dependent apoptosis, in which kinetic cooperativity in formation of the apoptosome is a key element ensuring bistability. We examine the role of Bax and Bcl-2 synthesis and degradation rates, as well as the number of mitochondrial permeability transition pores (MPTPs), on the cell response to apoptotic stimuli. Our analysis suggests that cooperative apoptosome formation is a mechanism for inducing bistability, much more robust than that induced by other mechanisms, such as inhibition of caspase-3 by the inhibitor of apoptosis (IAP). Simulations predict a pathological state in which cells will exhibit a monostable cell survival if Bax degradation rate is above a threshold value, or if Bax expression rate is below a threshold value. Otherwise, cell death or survival occur depending on initial caspase-3 levels. We show that high expression rates of Bcl-2 can counteract the effects of Bax. Our simulations also demonstrate a monostable (pathological) apoptotic response if the number of MPTPs exceeds a threshold value. This study supports our contention, based on mathematical modeling, that cooperativity in apoptosome formation is critically important for determining the healthy responses to apoptotic stimuli, and helps define the roles of Bax, Bcl-2, and MPTP vis-à-vis apoptosome formation.

Indexed as

Models, BiologicalAnimalsApoptosisbcl-2-Associated X ProteinCell Membrane PermeabilityCell SurvivalComputer SimulationHumansIon ChannelsMitochondriaMitochondrial Membrane Transport ProteinsMitochondrial Permeability Transition PoreProto-Oncogene Proteins c-bcl-2bcl-2-Associated X ProteinIon ChannelsMitochondrial Membrane Transport ProteinsMitochondrial Permeability Transition PoreProto-Oncogene Proteins c-bcl-2

Identifiers

PMID16339882
PMCPMC1367306

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.