Evidence map›Paper›PMID 16339850›Full record

ArticleThe Plant cell2006

Arabidopsis CONSTANS-LIKE3 is a positive regulator of red light signaling and root growth.

Sourav Datta, G H C M Hettiarachchi, Xing-Wang Deng, Magnus Holm

Abstract read
In one paragraph

Article in The Plant cell, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 172 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
172citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

172 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Plants (Basel, Switzerland) · 2026
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  5. Review
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  14. Genome-Wide Identification ofInternational journal of molecular sciences · 2025
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  18. OsBBX2 Delays Flowering by RepressingPlants (Basel, Switzerland) · 2024
    Article
  19. Article
  20. Article

112 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Sourav DattaDepartment of Cell and Molecular Biology, Gothenburg University, Sweden.
G H C M Hettiarachchi
Xing-Wang Deng
Magnus Holm

Funding

Analysis of a Light-Regulated Development SwitchR37GM047850 · NIGMS · YALE UNIVERSITY · PI DENG, XING WANG · 2004 to 2013
$5.7M
LIGHT SIGNAL TRANDUCTION IN ARABIDOPSISR01GM047850 · NIGMS · YALE UNIVERSITY · PI WEI, NING · 1996 to 2018
$4.1M
NIGMS NIH HHS R01 GM047850NIGMS NIH HHS R37 GM047850
6 · The paper itself

Abstract

CONSTITUTIVE PHOTOMORPHOGENIC1 (COP1) is an E3 ubiquitin ligase that represses photomorphogenesis in the dark. Therefore, proteins interacting with COP1 could be important regulators of light-dependent development. Here, we identify CONSTANS-LIKE3 (COL3) as a novel interaction partner of COP1. A green fluorescent protein-COL3 fusion protein colocalizes with COP1 to nuclear speckles when transiently expressed in plant cells. This localization requires the B-box domains in COL3, indicating a novel function of this domain. A loss-of-function col3 mutant has longer hypocotyls in red light and in short days. Unlike constans, the col3 mutant flowers early and shows a reduced number of lateral branches in short days. The mutant also exhibits reduced formation of lateral roots. The col3 mutation partially suppresses the cop1 and deetiolated1 (det1) mutations in the dark, suggesting that COL3 acts downstream of both of these repressors. However, the col3 mutation exerts opposing effects on cop1 and det1 in terms of lateral roots and anthocyanin accumulation, suggesting that COL3 also has activities that are independent of COP1 and DET1. In conclusion, we have identified COL3 as a positive regulator of photomorphogenesis that acts downstream of COP1 but can promote lateral root development independently of COP1 and also function as a daylength-sensitive regulator of shoot branching.

Indexed as

LightAmino Acid SequenceArabidopsisArabidopsis ProteinsCarrier ProteinsCell NucleusDNA-Binding ProteinsFlowersGene Expression Regulation, PlantHypocotylIntracellular Signaling Peptides and ProteinsMolecular Sequence DataMorphogenesisNuclear ProteinsPhotoperiodPlant RootsArabidopsis ProteinsAT2G32950 protein, ArabidopsisCarrier ProteinsCOL3 protein, ArabidopsisCONSTANS protein, ArabidopsisDET1 protein, ArabidopsisDNA-Binding ProteinsIntracellular Signaling Peptides and ProteinsNuclear ProteinsProtein IsoformsRecombinant Fusion ProteinsTranscription FactorsUbiquitin-Protein Ligases

Identifiers

PMID16339850
PMCPMC1323485

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.