Evidence map›Paper›PMID 16336045›Full record

ArticlePLoS biology2006

Horizontal transfer of a plant transposon.

Xianmin Diao, Michael Freeling, Damon Lisch

Abstract read
In one paragraph

Article in PLoS biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Revisiting theBiology · 2022
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Horizontal Gene Transfers in Plants.Life (Basel, Switzerland) · 2021
    Review
  11. Review
  12. Lateral transfers of large DNA fragments spread functional genes among grasses.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  13. Evolution ofMobile DNA · 2019
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Xianmin DiaoDepartment of Plant and Microbial Biology, University of California, Berkeley, California, USA.
Michael Freeling
Damon Lisch

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The majority of well-documented cases of horizontal transfer between higher eukaryotes involve the movement of transposable elements between animals. Surprisingly, although plant genomes often contain vast numbers of these mobile genetic elements, no evidence of horizontal transfer of a nuclear-encoded transposon between plant species has been detected to date. The most mutagenic known plant transposable element system is the Mutator system in maize. Mu-like elements (MULEs) are widespread among plants, and previous analysis has suggested that the distribution of various subgroups of MULEs is patchy, consistent with horizontal transfer. We have sequenced portions of MULE transposons from a number of species of the genus Setaria and compared them to each other and to publicly available databases. A subset of these elements is remarkably similar to a small family of MULEs in rice. A comparison of noncoding and synonymous sequences revealed that the observed similarity is not due to selection at the amino acid level. Given the amount of time separating Setaria and rice, the degree of similarity between these elements excludes the possibility of simple vertical transmission of this class of MULEs. This is the first well-documented example of horizontal transfer of any nuclear-encoded genes between higher plants.

Indexed as

Gene Transfer, HorizontalAmino Acid SequenceBase SequenceDNA Transposable ElementsIntronsMolecular Sequence DataOryzaSequence AlignmentSetaria PlantZea maysDNA Transposable Elements

Identifiers

PMID16336045
PMCPMC1310652

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.