Evidence map›Paper›PMID 16333104›Full record

ArticleJournal of clinical microbiology2005

Association of virulence genotype with phylogenetic background in comparison to different seropathotypes of Shiga toxin-producing Escherichia coli isolates.

Jean Pierre Girardeau, Alessandra Dalmasso, Yolande Bertin, Christian Ducrot, Séverine Bord, Valérie Livrelli, Christine Vernozy-Rozand, Christine Martin

Open access · greenAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.2field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 76 citations in OpenAlex.

  1. Article
  2. Shiga Toxin-ProducingPathogens (Basel, Switzerland) · 2024
    Article
  3. Review
  4. Interactions of Shiga toxin-producing Escherichia coli with leafy green vegetables.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2020
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
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  14. Article
  15. Identification of diarrheagenic Escherichia coli strains from avian organic fertilizers.International journal of environmental research and public health · 2014
    Article
  16. Review
  17. Molecular characterization of diarrheagenic Escherichia coli from Libya.The American journal of tropical medicine and hygiene · 2012
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Jean Pierre GirardeauInstitut National de Recherches Agronomiques, Laboratoire de Microbiologie, Centre de Recherche INRA de Clermont Ferrand Theix, 63122 Saint-Genès Champanelle, France. girard@clermont.inra.fr
Alessandra Dalmasso
Yolande Bertin
Christian Ducrot
Séverine Bord
Valérie Livrelli
Christine Vernozy-Rozand
Christine Martin
Centre de Recherche en Nutrition Humaine d'Auvergne · FRInstitut National de la Recherche Agronomique · MAÉcole Nationale Vétérinaire de Toulouse · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The distribution of virulent factors (VFs) in 287 Shiga toxin-producing Escherichia coli (STEC) strains that were classified according to Karmali et al. into five seropathotypes (M. A. Karmali, M. Mascarenhas, S. Shen, K. Ziebell, S. Johnson, R. Reid-Smith, J. Isaac-Renton, C. Clark, K. Rahn, and J. B. Kaper, J. Clin. Microbiol. 41:4930-4940, 2003) was investigated. The associations of VFs with phylogenetic background were assessed among the strains in comparison with the different seropathotypes. The phylogenetic analysis showed that STEC strains segregated mainly in phylogenetic group B1 (70%) and revealed the substantial prevalence (19%) of STEC belonging to phylogenetic group A (designated STEC-A). The presence of virulent clonal groups in seropathotypes that are associated with disease and their absence from seropathotypes that are not associated with disease support the concept of seropathotype classification. Although certain VFs (eae, stx(2-EDL933), stx(2-vha), and stx(2-vhb)) were concentrated in seropathotypes associated with disease, others (astA, HPI, stx(1c), and stx(2-NV206)) were concentrated in seropathotypes that are not associated with disease. Taken together with the observation that the STEC-A group was exclusively composed of strains lacking eae recovered from seropathotypes that are not associated with disease, the "atypical" virulence pattern suggests that STEC-A strains comprise a distinct category of STEC strains. A practical benefit of our phylogenetic analysis of STEC strains is that phylogenetic group A status appears to be highly predictive of "nonvirulent" seropathotypes.

Indexed as

PhylogenyAnimalsCattleCattle DiseasesEnvironmental MicrobiologyEscherichia coliEscherichia coli InfectionsEscherichia coli ProteinsFood MicrobiologyGenotypeHumansSerotypingShiga ToxinsVirulenceVirulence FactorsEscherichia coli ProteinsShiga ToxinsVirulence Factors

Identifiers

PMID16333104
PMCPMC1317181
OpenAlexW2045864547

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.