Evidence map›Paper›PMID 16332963›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

The SET domain protein Metnase mediates foreign DNA integration and links integration to nonhomologous end-joining repair.

Suk-Hee Lee, Masahiko Oshige, Stephen T Durant, Kanwaldeep Kaur Rasila, Elizabeth A Williamson, Heather Ramsey, Lori Kwan, Jac A Nickoloff, Robert Hromas

Open access · greenAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 94 papers.

0numbers the graph read from it
0cells of the map it votes in
94citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

94 citing papers in PubMed, 151 citations in OpenAlex.

  1. Article
  2. ThebioRxiv : the preprint server for biology · 2025
    Article
  3. Article
  4. DNA Damage Responses, the Trump Card of Stem Cells in the Survival Game.Advances in experimental medicine and biology · 2024
    Review
  5. Article
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  7. Article
  8. Review
  9. Genome assembly of the Pendlebury's roundleaf bat, Hipposideros pendleburyi, revealed the expansion of Tc1/Mariner DNA transposons in Rhinolophoidea.DNA research : an international journal for rapid publication of reports on genes and genomes · 2022
    Article
  10. Review
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  14. Article
  15. Review
  16. Article
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  18. Review
  19. WHSC1/NSD2 regulates immune infiltration in prostate cancer.Journal for immunotherapy of cancer · 2021
    Article
  20. NONO Inhibits Lymphatic Metastasis of Bladder Cancer via Alternative Splicing of SETMAR.Molecular therapy : the journal of the American Society of Gene Therapy · 2021
    Article

34 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Suk-Hee LeeDepartment of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, 46202, USA.
Masahiko Oshige
Stephen T Durant
Kanwaldeep Kaur Rasila
Elizabeth A Williamson
Heather Ramsey
Lori Kwan
Jac A Nickoloff
Robert Hromas
Indiana University – Purdue University Indianapolis · USIndiana University School of MedicineUniversity of New Mexico · US

Funding

DSB REPAIR RECOMBINATION, AND GENOME STABILITYR01CA100862 · NCI · UNIVERSITY OF NEW MEXICO · PI OSLEY, MARY ANN · 2004 to 2008
$1.4M
The Homeoprotein Hex Regulates Hemangioblast DifferentiationR01HL075783 · NHLBI · UNIVERSITY OF NEW MEXICO · PI HROMAS, ROBERT A · 2004 to 2007
$1.3M
Mechanism of DNA Damage Recognition in Higher EukaryotesR01CA092111 · NCI · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI LEE, SUK-HEE · 2001 to 2005
$1.3M
Oct-4 Regulates Embryonal Carcinoma DifferentiationR01CA102283 · NCI · UNIVERSITY OF NEW MEXICO · PI HROMAS, ROBERT A · 2003 to 2007
$1.2M
NCI NIH HHS CA100862NCI NIH HHS CA102283NCI NIH HHS CA92111NCI NIH HHS R01 CA092111NCI NIH HHS R01 CA100862NCI NIH HHS R01 CA102283NHLBI NIH HHS HL075783NHLBI NIH HHS R01 HL075783
6 · The paper itself

Abstract

The molecular mechanism by which foreign DNA integrates into the human genome is poorly understood yet critical to many disease processes, including retroviral infection and carcinogenesis, and to gene therapy. We hypothesized that the mechanism of genomic integration may be similar to transposition in lower organisms. We identified a protein, termed Metnase, that has a SET domain and a transposase/nuclease domain. Metnase methylates histone H3 lysines 4 and 36, which are associated with open chromatin. Metnase increases resistance to ionizing radiation and increases nonhomologous end-joining repair of DNA doublestrand breaks. Most significantly, Metnase promotes integration of exogenous DNA into the genomes of host cells. Therefore, Metnase is a nonhomologous end-joining repair protein that regulates genomic integration of exogenous DNA and establishes a relationship among histone modification, DNA repair, and integration. The data suggest a model wherein Metnase promotes integration of exogenous DNA by opening chromatin and facilitating joining of DNA ends. This study demonstrates that eukaryotic transposase domains can have important cell functions beyond transposition of genetic elements.

Indexed as

DNA MethylationAmino Acid SequenceCell LineDNADNA PrimersDNA RepairDNA Repair EnzymesHistone-Lysine N-MethyltransferaseHistonesHumansMethyltransferasesMolecular Sequence DataProtein Structure, TertiarySequence Analysis, DNAVirus IntegrationDNADNA PrimersDNA Repair EnzymesHistone-Lysine N-MethyltransferaseHistonesMethyltransferasesSETMAR protein, human

Identifiers

PMID16332963
PMCPMC1312370
OpenAlexW2019823534

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.