ArticleApplied and environmental microbiology2005
Development and evaluation of genome-probing microarrays for monitoring lactic acid bacteria.
Article in Applied and environmental microbiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed, 114 citations in OpenAlex.
- Development of a selective medium for the enumeration of lactic acid bacteria and bifidobacteria in food products.Food science and biotechnology · 2023Article
- Molecular tools for the analysis of the microbiota involved in malolactic fermentation: from microbial diversity to selection of lactic acid bacteria of enological interest.World journal of microbiology & biotechnology · 2022Review
- Effect of Fungi on Metabolite Changes in Kimchi During Fermentation.Molecules (Basel, Switzerland) · 2020Article
- Design of Primers for Evaluation of Lactic Acid Bacteria Populations in Complex Biological Samples.Frontiers in microbiology · 2018Article
- Acinetobacter apis sp. nov., isolated from the intestinal tract of a honey bee, Apis mellifera.Journal of microbiology (Seoul, Korea) · 2014Article
- RubisCO gene clusters found in a metagenome microarray from acid mine drainage.Applied and environmental microbiology · 2013Article
- Nucleic acid-based approaches to investigate microbial-related cheese quality defects.Frontiers in microbiology · 2013Article
- Novel Podoviridae family bacteriophage infecting Weissella cibaria isolated from Kimchi.Applied and environmental microbiology · 2012Article
- Evaluation of a fosmid-clone-based microarray for comparative analysis of swine fecal metagenomes.Journal of microbiology (Seoul, Korea) · 2012Article
- Molecular techniques in the biotechnological fight against halogenated compounds in anoxic environments.Microbial biotechnology · 2012Review
- Draft genome sequence of Lactobacillus zeae KCTC 3804.Journal of bacteriology · 2011Article
- Draft genome sequence of Lactobacillus mali KCTC 3596.Journal of bacteriology · 2011Article
- Genome sequence of Leuconostoc pseudomesenteroides KCTC 3652.Journal of bacteriology · 2011Article
- Metagenomic analysis of kimchi, a traditional Korean fermented food.Applied and environmental microbiology · 2011Article
- Genome sequence of Lactobacillus farciminis KCTC 3681.Journal of bacteriology · 2011Article
- Genome sequence of Lactobacillus animalis KCTC 3501.Journal of bacteriology · 2011Article
- Metagenomic analysis of the viral communities in fermented foods.Applied and environmental microbiology · 2011Article
- Genome sequence of Lactobacillus coryniformis subsp. coryniformis KCTC 3167.Journal of bacteriology · 2011Article
- Genome sequence of Leuconostoc fallax KCTC 3537.Journal of bacteriology · 2011Article
- Oceanobacillus kimchii sp. nov. isolated from a traditional Korean fermented food.Journal of microbiology (Seoul, Korea) · 2010Article
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Authors and funding
8 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The genome-probing microarray (GPM) was developed for quantitative, high-throughput monitoring of community dynamics in lactic acid bacteria (LAB) fermentation through the deposit of 149 microbial genomes as probes on a glass slide. Compared to oligonucleotide microarrays, the specificity of GPM was remarkably increased to a species-specific level. GPM possesses about 10- to 100-fold higher sensitivity (2.5 ng of genomic DNA) than the currently used 50-mer oligonucleotide microarrays. Since signal variation between the different genomes was very low compared to that of cDNA or oligonucleotide-based microarrays, the capacity of global quantification of microbial genomes could also be observed in GPM hybridization. In order to assess the applicability of GPMs, LAB community dynamics were monitored during the fermentation of kimchi, a traditional Korean food. In this work, approximately 100 diverse LAB species could be quantitatively analyzed as actively involved in kimchi fermentation.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.