Evidence map›Paper›PMID 16332824›Full record

ArticleApplied and environmental microbiology2005

Complete sequences of four plasmids of Lactococcus lactis subsp. cremoris SK11 reveal extensive adaptation to the dairy environment.

Roland J Siezen, Bernadet Renckens, Iris van Swam, Sander Peters, Richard van Kranenburg, Michiel Kleerebezem, Willem M de Vos

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
11.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 140 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. A Plasmid-Encoded Surface Polysaccharide Partly BlocksInternational journal of molecular sciences · 2025
    Article
  5. Article
  6. Review
  7. Phenotypic and Safety Assessment of the Cheese StrainInternational journal of molecular sciences · 2022
    Article
  8. Article
  9. Article
  10. Development ofFrontiers in microbiology · 2020
    Article
  11. Modeled Structure of the Cell Envelope Proteinase ofFrontiers in bioengineering and biotechnology · 2020
    Article
  12. Article
  13. TheFrontiers in microbiology · 2019
    Article
  14. Comparative Genome Analysis ofFrontiers in microbiology · 2019
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Further Elucidation of Galactose Utilization inFrontiers in microbiology · 2018
    Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Roland J SiezenCentre for Molecular andBiomolecular Informatics, Radboud University, P.O. Box 9010, 6500GL Nijmegen, The Netherlands. Siezen@cmbi.ru.nl
Bernadet Renckens
Iris van Swam
Sander Peters
Richard van Kranenburg
Michiel Kleerebezem
Willem M de Vos
Wageningen University & Research · NLNederlands Instituut Voor Zuivel Oonderzoek · NLCentre for BioSystems Genomics · NLRadboud University Nijmegen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lactococcus lactis strains are known to carry plasmids encoding industrially important traits. L. lactis subsp. cremoris SK11 is widely used by the dairy industry in cheese making. Its complete plasmid complement was sequenced and found to contain the plasmids pSK11A (10,372 bp), pSK11B (13,332 bp), pSK11L (47,165 bp), and pSK11P (75,814 bp). Six highly homologous repB-containing replicons were found, all belonging to the family of lactococcal theta-type replicons. Twenty-three complete insertion sequence elements segment the plasmids into numerous modules, many of which can be identified as functional units or containing functionally related genes. Plasmid-encoded functions previously known to reside on L. lactis SK11 plasmids were now mapped in detail, e.g., lactose utilization (lacR-lacABCDFEGX), the proteolytic system (prtM-prtP, pepO, pepF), and the oligopeptide permease system (oppDFBCA). Newly identified plasmid-encoded functions could facilitate the uptake of various cations, while the pabA and pabB genes could be essential for folate biosynthesis. A competitive advantage could be obtained by using the putative flavin adenine dinucleotide-dependent d-lactate dehydrogenase and oxalate:formate antiporter for enhanced ATP synthesis, while the activity of the predicted alpha-acetolactate decarboxylase may contribute to the formation of an additional electron sink. Various stress response proteins are plasmid encoded, which could enhance strain robustness. A substantial number of these "adaptation" genes have not been described before on L. lactis plasmids. Moreover, several genes were identified for the first time in L. lactis, possibly reflecting horizontal gene transfer.

Indexed as

Base SequenceCodon, InitiatorDNA ReplicationLactococcus lactisLactoseMolecular Sequence DataOpen Reading FramesPlasmidsRestriction MappingSequence AlignmentSequence Homology, Nucleic AcidCodon, InitiatorLactose

Identifiers

PMID16332824
PMCPMC1317451
OpenAlexW2148867241

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.