Evidence map›Paper›PMID 16331260›Full record

ArticleOncogene2006

Site-specific DNA methylation by a complex of PU.1 and Dnmt3a/b.

M Suzuki, T Yamada, F Kihara-Negishi, T Sakurai, E Hara, D G Tenen, N Hozumi, T Oikawa

Abstract read
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In one paragraph

Article in Oncogene, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. CA10 is associated with HBV-related hepatocarcinogenesis.Biochemistry and biophysics reports · 2022
    Article
  6. Article
  7. Article
  8. Article
  9. Enzymology of Mammalian DNA Methyltransferases.Advances in experimental medicine and biology · 2022
    Article
  10. Deciphering the genetic code of DNA methylation.Briefings in bioinformatics · 2021
    Review
  11. Article
  12. Targeting Epigenetic Mechanisms in Vascular Aging.Frontiers in cardiovascular medicine · 2021
    Review
  13. Article
  14. Review
  15. From 1957 to Nowadays: A Brief History of Epigenetics.International journal of molecular sciences · 2020
    Review
  16. DNA methyltransferases in hematological malignancies.Journal of genetics and genomics = Yi chuan xue bao · 2020
    Review
  17. Article
  18. Review
  19. Article
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

M SuzukiDepartment of Cell Genetics, Sasaki Institute, Tokyo, Japan.
T Yamada
F Kihara-Negishi
T Sakurai
E Hara
D G Tenen
N Hozumi
T Oikawa

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Ets transcription factor PU.1 is a hematopoietic master regulator essential for the development of myeloid and B-cell lineages. As we previously reported, PU.1 sometimes represses transcription on forming a complex with mSin3A-histone deacetyl transferase-MeCP2. Here, we show an interaction between PU.1 and DNA methyltransferases, DNA methyltransferase (Dnmt)3a and Dnmt3b (Dnmt3s). Glutathione-S-transferase pulldown assay revealed that PU.1 directly interacted with the ATRX domain of Dnmt3s through the ETS domain. Dnmt3s repressed the transcriptional activity of PU.1 on a reporter construct with trimerized PU.1-binding sites. The repression was recovered by addition of 5-aza-deoxycitidine, a DNA methyltransferase inhibitor, but not trichostatin A, a histone deacetylase inhibitor. Bisulfite sequence analysis revealed that several CpG sites in the promoter region neighboring the PU.1-binding sites were methylated when Dnmt3s were coexpressed with PU.1. We also showed that the CpG sites in the p16(INK4A) promoter were methylated by overexpression of PU.1 in NIH3T3 cells, accompanied by a downregulation of p16(INK4A) gene expression. These results suggest that PU.1 may downregulate its target genes through an epigenetic modification such as DNA methylation.

Indexed as

DNA MethylationAnimalsAzacitidineChromatin ImmunoprecipitationCyclin-Dependent Kinase Inhibitor p16DecitabineDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3ADNA Methyltransferase 3BHistone Deacetylase InhibitorsHistone DeacetylasesHydroxamic AcidsImmunoprecipitationMiceNIH 3T3 CellsPromoter Regions, GeneticAzacitidineCyclin-Dependent Kinase Inhibitor p16DecitabineDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3ADNA Methyltransferase 3BDnmt3a protein, mouseHistone Deacetylase InhibitorsHistone DeacetylasesHydroxamic AcidsProto-Oncogene ProteinsProto-Oncogene Protein Spi-1Trans-Activatorstrichostatin A

Identifiers

PMID16331260

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.