Evidence map›Paper›PMID 16322993›Full record

ArticleCurrent genetics2006

Analysis of Opi1p repressor mutants.

Mohan R Kaadige, John M Lopes

Abstract read
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In one paragraph

Article in Current genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

  1. Redirection of lipid flux toward phospholipids in yeast increases fatty acid turnover and secretion.Proceedings of the National Academy of Sciences of the United States of America · 2018
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  3. Article
  4. Article
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  6. A SWI/SNF- and INO80-dependent nucleosome movement at the INO1 promoter.Biochemical and biophysical research communications · 2007
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Mohan R KaadigeDepartment of Biological Sciences, Wayne State University, Detroit, MI 48202, USA.
John M Lopes
Wayne State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Opi1p is the only known repressor protein specific to the phospholipid biosynthetic pathway. Opi1p is required for repression in response to inositol and choline supplementation. However, the mechanism of Opi1p repression is not completely understood. In part, this is because previously identified opi1 mutants contained nonsense mutations and thus provided little insight into the mechanism of Opi1p function. We have recently reported isolating novel opi1 mutants (rum and dim mutants) that contain missense mutations. Here, we show that these opi1 mutants produce Opi1p product at levels comparable to a wild-type strain. However, these mutants mis-regulate expression of two target genes, INO2-HIS3 and INO1-lacZ, and are also defective in autoregulation. An opi1-S339F mutant is particularly interesting because it completely eliminated autoregulation, but only abated regulation of an INO1-lacZ reporter. Two of the mutations in OPI1 (V343Q and S339F) provide genetic evidence for an interaction between Opi1p and the Ino2p activator since they reside in a region of Opi1p recently shown to interact with Ino2p in vitro. A third mutation (L252F) resides in a region of Opi1p with no known function.

Indexed as

Amino Acid SequenceBasic Helix-Loop-Helix ProteinsConserved SequenceMolecular Sequence DataMutation, MissenseMyo-Inositol-1-Phosphate SynthaseRepressor ProteinsSaccharomyces cerevisiae ProteinsTranscription FactorsBasic Helix-Loop-Helix ProteinsINO2 protein, S cerevisiaeMyo-Inositol-1-Phosphate SynthaseOPI1 protein, S cerevisiaeRepressor ProteinsSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID16322993
OpenAlexW2051129409

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.