Evidence map›Paper›PMID 16322562›Full record

ArticleProtein science : a publication of the Protein Society2006

Identification of surface-exposed components of MOMP of Chlamydia trachomatis serovar F.

Yan Wang, Eric A Berg, Xiaogeng Feng, Li Shen, Temple Smith, Catherine E Costello, You-xun Zhang

Open access · greenAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
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  4. Diversity of σJournal of bacteriology · 2023
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  5. Molecular pathogenesis ofFrontiers in cellular and infection microbiology · 2023
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  7. Overexpression of the Bam Complex Improves the Production ofInternational journal of molecular sciences · 2022
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  8. Article
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  12. Microbial genomics · 2019
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Membrane vesicle production by Chlamydia trachomatis as an adaptive response.Frontiers in cellular and infection microbiology · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Yan WangSection of Infectious Diseases, Department of Medicine, Boston University School of Medicine, Boston, MA 02118, USA.
Eric A Berg
Xiaogeng Feng
Li Shen
Temple Smith
Catherine E Costello
You-xun Zhang
Boston University · US

Funding

XI INTERNATIONAL SYMPOSIUM ON AMYLOIDOSISP41RR010888 · NCRR · BOSTON UNIVERSITY MEDICAL CAMPUS · PI ZAIA, JOSEPH · 1996 to 2011
$18.6M
DISULFIDE BRIDGE EPITOPES IN CHLAMYDIAL MOMPR01AI047853 · NIAID · BOSTON MEDICAL CENTER · PI ZHANG, YOU-XUN · 2000 to 2004
$1.4M
UV&IR MALDI REFLECTION TIME OF FLIGHT MASS SPECTROMETERS10RR015942 · NCRR · BOSTON UNIVERSITY MEDICAL CAMPUS · PI COSTELLO, CATHERINE E. · 2001 to 2001
$402k
NCRR NIH HHS P41 RR010888NCRR NIH HHS P41 RR10888NCRR NIH HHS S10 RR15942NIAID NIH HHS R01 AI047853NIAID NIH HHS R01 AI47853
6 · The paper itself

Abstract

The identification of surface-exposed components of the major outer membrane protein (MOMP) of Chlamydia is critical for modeling its three-dimensional structure, as well as for understanding the role of MOMP in the pathogenesis of Chlamydia-related diseases. MOMP contains four variable domains (VDs). In this study, VDII and VDIV of Chlamydia trachomatis serovar F were proven to be surface-located by immuno-dot blot assay using monoclonal antibodies (MAbs). Two proteases, trypsin and endoproteinase Glu-C, were applied to digest the intact elementary body of serovar F under native conditions to reveal the surface-located amino acids. The resulting peptides were separated by SDS-PAGE and probed with MAbs against these VDs. N-terminal amino acid sequencing revealed: (1) The Glu-C cleavage sites were located within VDI (at Glu61) and VDIII (at Glu225); (2) the trypsin cleavage sites were found at Lys79 in VDI and at Lys224 in VDIII. The tryptic peptides were then isolated by HPLC and analyzed with a matrix-assisted laser desorption/ionization time-of-flight mass spectrometer and a quadrupole-orthogonal-TOF mass spectrometer coupled with a capillary liquid chromatograph. Masses and fragmentation patterns that correlated to the peptides cleaved from VDI and VDIII regions, and C-terminal peptides Ser333-Arg358 and Ser333-Lys350 were observed. This result demonstrated that these regions are surface-exposed. Data derived from comparison of nonreduced outer membrane complex proteolytic fragments with their reduced fractions revealed that Cys26, 29, 33, 116, 208, and 337 were involved in disulfide bonds, and Cys26 and 337, and 116 and 208 were paired. Based on these data, a new two-dimensional model is proposed.

Indexed as

Amino Acid SequenceBlotting, WesternCell WallChlamydia trachomatisComputational BiologyCysteineImmunoblottingModels, MolecularMolecular Sequence DataPorinsProtein Structure, SecondaryProtein Structure, TertiarySequence Analysis, ProteinSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationCysteineomp1 protein, Chlamydia trachomatisPorins

Identifiers

PMID16322562
PMCPMC2242375
OpenAlexW2137015419

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.