Evidence map›Paper›PMID 16322558›Full record

ArticleGenes & development2005

Recruitment of ORC or CDC6 to DNA is sufficient to create an artificial origin of replication in mammalian cells.

David Y Takeda, Yoshiyuki Shibata, Jeffrey D Parvin, Anindya Dutta

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 76 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Regulation of DNA Replication Licensing and Re-Replication by Cdt1.International journal of molecular sciences · 2021
    Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Mechanisms and regulation of DNA replication initiation in eukaryotes.Critical reviews in biochemistry and molecular biology · 2017
    Review
  12. Article
  13. The LMO2 oncogene regulates DNA replication in hematopoietic cells.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  14. ORC proteins in the mammalian zygote.Cell and tissue research · 2016
    Review
  15. Genome Duplication: The Heartbeat of Developing Organisms.Current topics in developmental biology · 2016
    Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

David Y TakedaDepartment of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA.
Yoshiyuki Shibata
Jeffrey D Parvin
Anindya Dutta
Brigham and Women's Hospital · USUniversity of Virginia · US

Funding

The role of MCM8-9 in genomic instability of cancersR01CA060499 · NCI · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI Anindya Dutta · 1994 to 2026
$8.6M
ROLE OF CY MOTIFS IN SUBSTRATE RECOGNITION BY CDKSR01CA089406 · NCI · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI DUTTA, ANINDYA · 2001 to 2011
$2.1M
TFIIH HELICASES AND RNA POLYMERASE II HOLOENZYMER01GM053504 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI PARVIN, JEFFREY D · 1996 to 2005
$1.6M
NCI NIH HHS CA60499NCI NIH HHS CA89406NCI NIH HHS R01 CA060499NCI NIH HHS R01 CA089406NIGMS NIH HHS GM053504NIGMS NIH HHS R01 GM053504
6 · The paper itself

Abstract

Origins of replication are expected to recruit initiation proteins like origin recognition complex (ORC) and Cdc6 in eukaryotes and provide a platform for unwinding DNA. Here we test whether localization of initiation proteins onto DNA is sufficient for origin function. Different components of the ORC complex and Cdc6 stimulated prereplicative complex (pre-RC) formation and replication initiation when fused to the GAL4 DNA-binding domain and recruited to plasmid DNA containing a tandem array of GAL4-binding sites. Replication occurred once per cell cycle and was inhibited by Geminin, indicating that the plasmid was properly licensed during the cell cycle. The GAL4 fusion protein recruits other polypeptides of the ORC-Cdc6 complex, and nascent strand abundance was highest near the GAL4-binding sites. Therefore, the artificial origin recapitulates many of the regulatory features of physiological origins and is valuable for studies on replication initiation in mammalian cells. We demonstrated the utility of this system by showing the functional importance of the ATPase domains of human Cdc6 and Orc1 and the dispensability of the N-terminal segments of Orc1 and Orc2 in this assay. Artificial recruitment of a eukaryotic cellular replication initiation factor to a DNA sequence can create a functional origin of replication, providing a robust genetic assay for these factors and a novel approach to generating episomal vectors for gene therapy.

Indexed as

Replication OriginAdenosine TriphosphatasesBinding SitesCell Cycle ProteinsCell LineDNADNA-Binding ProteinsHumansNuclear ProteinsOrigin Recognition ComplexPlasmidsRecombinant Fusion ProteinsSaccharomyces cerevisiae ProteinsTranscription FactorsAdenosine TriphosphatasesCDC6 protein, mouseCell Cycle ProteinsDNADNA-Binding ProteinsGAL4 protein, S cerevisiaeNuclear ProteinsOrigin Recognition ComplexRecombinant Fusion ProteinsSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID16322558
PMCPMC1315390
OpenAlexW2114342381

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.