Evidence map›Paper›PMID 16322513›Full record

ArticleGenetics2006

Genetic and molecular characterization of the I locus of Phaseolus vulgaris.

C Eduardo Vallejos, Gustavo Astua-Monge, Valerie Jones, Tammy R Plyler, Ney S Sakiyama, Sally A Mackenzie

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 100 citations in OpenAlex.

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  10. Viruses · 2021
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  14. Genome-Wide Association Mapping ofFrontiers in plant science · 2021
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  15. Fine-mapping of angular leaf spot resistance gene Phg-2 in common bean and development of molecular breeding tools.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019
    Article
  16. Article
  17. Article
  18. Copy number variation and disease resistance in plants.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017
    Review
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

C Eduardo VallejosDepartment of Horticultural Sciences, University of Florida, Gainesville 32611-0690, USA. vallejos@ufl.edu
Gustavo Astua-Monge
Valerie Jones
Tammy R Plyler
Ney S Sakiyama
Sally A Mackenzie
University of Florida · USAgroécologie · FRUniversidade Federal de Viçosa · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The I locus of the common bean, Phaseolus vulgaris, controls the development of four different phenotypes in response to inoculation with Bean common mosaic virus, Bean common mosaic necrosis virus, several other related potyviruses, and one comovirus. We have generated a high-resolution linkage map around this locus and have aligned it with a physical map constructed with BAC clones. These clones were obtained from a library of the cultivar "Sprite," which carries the dominant allele at the I locus. We have identified a large cluster of TIR-NBS-LRR sequences associated within this locus, which extends over a distance >425 kb. Bean cultivars from the Andean or Mesoamerican gene pool that contain the dominant allele share the same haplotypes as revealed by gel blot hybridizations with a TIR probe. In contrast, beans with a recessive allele display simpler and variable haplotypes. A survey of wild accessions from Argentina to Mexico showed that this multigene family has expanded significantly during evolution and domestication. RNA gel blot analysis indicated that the TIR family of genes plays a role in the response to inoculations with BCMV or BCMNV.

Indexed as

Genetic MarkersAmino Acid SequenceGene DuplicationGenetic LinkageMolecular Sequence DataMultigene FamilyPhaseolusPlant VirusesRandom Amplified Polymorphic DNA TechniqueRecombination, GeneticGenetic Markers

Identifiers

PMID16322513
PMCPMC1456221
OpenAlexW2097598479

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.