Evidence map›Paper›PMID 16314568›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

Bioinformatic analyses implicate the collaborating meiotic crossover/chiasma proteins Zip2, Zip3, and Spo22/Zip4 in ubiquitin labeling.

Jason Perry, Nancy Kleckner, G Valentin Börner

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Frontiers in plant science · 2023
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. HEIP1 regulates crossover formation during meiosis in rice.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  14. Article
  15. Zinc Transporter Proteins.Neurochemical research · 2018
    Review
  16. Article
  17. Article
  18. Human male infertility and its genetic causes.Reproductive medicine and biology · 2017
    Review
  19. Article
  20. Exploiting theMolecular breeding : new strategies in plant improvement · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Jason PerryDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA.
Nancy Kleckner
G Valentin Börner
Cleveland State University · USHarvard University · US

Funding

MEIOTIC CHROMOSOME SYNAPSIS AND RECOMBINATION IN YEASTR01GM044794 · NIGMS · HARVARD UNIVERSITY · PI KLECKNER, NANCY E · 1990 to 2018
$13.8M
ILLEGITIMATE RECOMBINATION BY DRUG RESISTANCE ELEMENTSR01GM025326 · NIGMS · HARVARD UNIVERSITY · PI KLECKNER, NANCY E · 1985 to 2019
$12.5M
ILLEGITIMATE RECOMBINATION BY DRUG RESISTANCE ELEMENTSR37GM025326 · NIGMS · HARVARD UNIVERSITY · PI KLECKNER, NANCY E. · 1991 to 2000
$656k
NIGMS NIH HHS GM25326NIGMS NIH HHS GM44794NIGMS NIH HHS R01 GM025326NIGMS NIH HHS R01 GM044794NIGMS NIH HHS R37 GM025326
6 · The paper itself

Abstract

Zip2 and Zip3 are meiosis-specific proteins that, in collaboration with several partners, act at the sites of crossover-designated, axis-associated recombinational interactions to mediate crossover/chiasma formation. Here, Spo22 (also called Zip4) is identified as a probable functional collaborator of Zip2/3. The molecular roles of Zip2, Zip3, and Spo22/Zip4 are unknown. All three proteins are part of a small evolutionary cohort comprising similar homologs in four related yeasts. Zip3 is shown to contain a RING finger whose structural features most closely match those of known ubiquitin E3s. Further, Zip3 exhibits major domainal homologies to Rad18, a known DNA-binding ubiquitin E3. Also described is an approach to the identification and mapping of repeated protein sequence motifs, Alignment Based Repeat Annotation (ABRA), that we have developed. When ABRA is applied to Zip2 and Spo22/Zip4, they emerge as a 14-blade WD40-like repeat protein and a 22-unit tetratricopeptide repeat protein, respectively. WD40 repeats of Cdc20, Cdh1, and Cdc16 and tetratricopeptide repeats of Cdc16, Cdc23, and Cdc27, all components of the anaphase-promoting complex, are also analyzed. These and other findings suggest that Zip2, Zip3, and Zip4 act together to mediate a process that involves Zip3-mediated ubiquitin labeling, potentially as a unique type of ubiquitin-conjugating complex.

Indexed as

Computational BiologyMeiosisAmino Acid SequenceCell Cycle ProteinsCrossing Over, GeneticModels, MolecularMolecular Sequence DataPhylogenyProtein BindingProtein Structure, QuaternaryProtein SubunitsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence AlignmentSequence Homology, Amino AcidUbiquitinCell Cycle ProteinsProtein SubunitsSaccharomyces cerevisiae ProteinsUbiquitin

Identifiers

PMID16314568
PMCPMC1308910
OpenAlexW2121260993

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.