Evidence map›Paper›PMID 16314514›Full record

ArticleMolecular and cellular biology2005

Human TopBP1 ensures genome integrity during normal S phase.

Ja-Eun Kim, Sarah A McAvoy, David I Smith, Junjie Chen

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 70 citations in OpenAlex.

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  7. SHPRH regulates rRNA transcription by recognizing the histone code in an mTOR-dependent manner.Proceedings of the National Academy of Sciences of the United States of America · 2017
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  19. Expression of TopBP1 in hereditary breast cancer.Molecular biology reports · 2012
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Ja-Eun KimDepartment of Oncology, Mayo Clinic College of Medicine, Rochester, MN 55905, USA.
Sarah A McAvoy
David I Smith
Junjie Chen
Mayo Clinic · USRadiation Oncology Associates · US

Funding

Analysis of BRCA1 Function in DNA RepairR01CA089239 · NCI · YALE UNIVERSITY · PI CHEN, JUNJIE · 2001 to 2015
$3.7M
Study the Role of DNA Damage Responses in Tumorigenesis and SenescenceR01CA092312 · NCI · YALE UNIVERSITY · PI CHEN, JUNJIE · 2001 to 2015
$3.5M
Analysis of 53BP1 function in DNA Damage-signaled pathway and TumorigenesisR01CA100109 · NCI · YALE UNIVERSITY · PI CHEN, JUNJIE · 2003 to 2010
$2.4M
NCI NIH HHS CA100109NCI NIH HHS CA89239NCI NIH HHS CA92312NCI NIH HHS R01 CA089239NCI NIH HHS R01 CA092312NCI NIH HHS R01 CA100109
6 · The paper itself

Abstract

Cell cycle checkpoints are essential for maintaining genomic integrity. Human topoisomerase II binding protein 1 (TopBP1) shares sequence similarity with budding yeast Dpb11, fission yeast Rad4/Cut5, and Xenopus Cut5, all of which are required for DNA replication and cell cycle checkpoints. Indeed, we have shown that human TopBP1 participates in the activation of replication checkpoint and DNA damage checkpoints, following hydroxyurea treatment and ionizing radiation. In this study, we address the physiological function of TopBP1 in S phase by using small interfering RNA. In the absence of exogenous DNA damage, TopBP1 is recruited to replicating chromatin. However, TopBP1 does not appear to be essential for DNA replication. TopBP1-deficient cells have increased H2AX phosphorylation and ATM-Chk 2 activation, suggesting the accumulation of DNA double-strand breaks in the absence of TopBP1. This leads to formation of gaps and breaks at fragile sites, 4N accumulation, and aberrant cell division. We propose that the cellular function of TopBP1 is to monitor ongoing DNA replication. By ensuring proper DNA replication, TopBP1 plays a critical role in the maintenance of genomic stability during normal S phase as well as following genotoxic stress.

Indexed as

DNA DamageDNA ReplicationGenomic InstabilityS PhaseAtaxia Telangiectasia Mutated ProteinsCarrier ProteinsCell Cycle ProteinsCheckpoint Kinase 2ChromatinDNA-Binding ProteinsHistonesHumansNuclear ProteinsPhosphorylationProtein Serine-Threonine KinasesRNA, Small InterferingAtaxia Telangiectasia Mutated ProteinsATM protein, humanCarrier ProteinsCell Cycle ProteinsCheckpoint Kinase 2CHEK2 protein, humanChromatinDNA-Binding ProteinsH2AX protein, humanHistonesNuclear ProteinsProtein Serine-Threonine KinasesRNA, Small InterferingTOPBP1 protein, humanTumor Suppressor Proteins

Identifiers

PMID16314514
PMCPMC1316943
OpenAlexW2136973075

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.