Evidence map›Paper›PMID 16314453›Full record

ArticleRNA (New York, N.Y.)2005

Ge-1 is a central component of the mammalian cytoplasmic mRNA processing body.

Jiang Hong Yu, Wei-Hong Yang, Tod Gulick, Kenneth D Bloch, Donald B Bloch

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 104 papers.

0numbers the graph read from it
0cells of the map it votes in
104citing papers in PubMed
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

104 citing papers in PubMed, 193 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Review
  8. Repeat-associated non-AUG translation induces cytoplasmic aggregation of CAG repeat-containing RNAs.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  9. Article
  10. Article
  11. Novel insights into roles of N6-methyladenosine reader YTHDF2 in cancer progression.Journal of cancer research and clinical oncology · 2022
    Review
  12. Article
  13. Article
  14. Eukaryotic mRNA Decapping Activation.Frontiers in genetics · 2022
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

44 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Jiang Hong YuDepartment of Medicine, Havard Medical School, the Center for Immunology and Inflammatory Diseases, Massachusetts General Hospital, Boston, Charlestown, MA 02129, USA.
Wei-Hong Yang
Tod Gulick
Kenneth D Bloch
Donald B Bloch
Harvard University · USMassachusetts General Hospital · USDiabetes Australia · AU

Funding

BMPR2 and the Pathogenesis of Pulmonary HypertensionR01HL074352 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI BLOCH, KENNETH D · 2003 to 2011
$3.7M
Nitric oxide synthase 3 and left ventricular remodelingR01HL070896 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI BLOCH, KENNETH D · 2003 to 2006
$1.7M
AUTOANTIGENS AND THE NUCLEAR BODYR29DK051179 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI BLOCH, DONALD B · 1996 to 2000
$121k
NHLBI NIH HHS HL070896NHLBI NIH HHS HL074352NHLBI NIH HHS R01 HL070896NHLBI NIH HHS R01 HL074352NIDDK NIH HHS DK051179
6 · The paper itself

Abstract

The mRNA processing body (P-body) is a cellular structure that regulates gene expression by degrading cytoplasmic mRNA. The objective of this study was to identify and characterize novel components of the mammalian P-body. Approximately 5% of patients with the autoimmune disease primary biliary cirrhosis have antibodies directed against this structure. Serum from one of these patients was used to identify a cDNA encoding Ge-1, a 1,401-amino-acid protein. Ge-1 contains an N-terminal WD 40 motif and C-terminal domains characterized by a repeating psi(X(2-3)) motif. Ge-1 co-localized with previously identified P-body components, including proteins involved in mRNA decapping (DCP1a and DCP2) and the autoantigen GW 182. The Ge-1 C-terminal domain was necessary and sufficient to target the protein to P-bodies. Following exposure of cells to oxidative stress, Ge-1-containing P-bodies were found adjacent to TIA-containing stress granules. During the recovery period, TIA returned to the nucleus while Ge-1-containing P-bodies localized to the perinuclear region. siRNA-mediated knock-down of Ge-1 resulted in loss of P-bodies containing Ge-1, DCP1a, and DCP2. In contrast, Ge-1-containing P-bodies persisted despite knock-down of DCP2. Taken together, the results of this study show that Ge-1 is a central component of P-bodies and suggest that Ge-1 may act prior to the 5(')-decapping step in mRNA degradation.

Indexed as

Amino Acid MotifsAmino Acid SequenceAntibodiesAutoantigensCell Line, TumorCytoplasmic StructuresFluorescent Antibody Technique, IndirectFluorescent DyesHumansImmunohistochemistryIndolesLiver Cirrhosis, BiliaryNuclear ProteinsOxidative StressProteinsProtein Structure, TertiaryAntibodiesAutoantigensDAPIEDC4 protein, humanFluorescent DyesIndolesNuclear ProteinsProteinsRNA CapsRNA, MessengerRNA, Small InterferingSerine

Identifiers

PMID16314453
PMCPMC1370868
OpenAlexW2128420974

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.