Evidence map›Paper›PMID 16314397›Full record

ArticleMolecular biology of the cell2006

Mutations in tap uncouple RNA export activity from translocation through the nuclear pore complex.

Lyne Lévesque, Yeou-Cherng Bor, Leah H Matzat, Li Jin, Stephen Berberoglu, David Rekosh, Marie-Louise Hammarskjöld, Bryce M Paschal

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Lyne LévesqueDepartment of Cell and Developmental Biology, University of Illinois in Urbana-Champaign, Urbana, IL 61801, USA. levesque@uiuc.edu
Yeou-Cherng Bor
Leah H Matzat
Li Jin
Stephen Berberoglu
David Rekosh
Marie-Louise Hammarskjöld
Bryce M Paschal
University of Virginia · USUniversity of Illinois Urbana-Champaign · US

Funding

PATHWAYS OF NUCLEOCYTOPLASMIC TRANSPORTR01GM058639 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI PASCHAL, BRYCE · 2000 to 2009
$2.2M
HIV Rev FunctionR01AI054335 · NIAID · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI HAMMARSKJOLD, MARIE-LOUISE · 2003 to 2007
$1.5M
REGULATION OF HIV RNA PROCESSING AND TRANSPORTR01AI034721 · NIAID · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI HAMMARSKJOLD, MARIE-LOUISE · 1994 to 2002
$734k
NIAID NIH HHS R01 AI054335NIAID NIH HHS R01 AI34721NIGMS NIH HHS GM58639NIGMS NIH HHS R01 GM058639
6 · The paper itself

Abstract

Interactions between transport receptors and phenylalanine-glycine (FG) repeats on nucleoporins drive the translocation of receptor-cargo complexes through nuclear pores. Tap, a transport receptor that mediates nuclear export of cellular mRNAs, contains a UBA-like and NTF2-like folds that can associate directly with FG repeats. In addition, two nuclear export sequences (NESs) within the NTF2-like region can also interact with nucleoporins. The Tap-RNA complex was shown to bind to three nucleoporins, Nup98, p62, and RanBP2, and these interactions were enhanced by Nxt1. Mutations in the Tap-UBA region abolished interactions with all three nucleoporins, whereas the effect of point mutations within the NTF2-like domain of Tap known to disrupt Nxt1 binding or nucleoporin binding were nucleoporin dependent. A mutation in any of these Tap domains was sufficient to reduce RNA export but was not sufficient to disrupt Tap interaction with the NPC in vivo or its nucleocytoplasmic shuttling. However, shuttling activity was reduced or abolished by combined mutations within the UBA and either the Nxt1-binding domain or NESs. These data suggest that Tap requires both the UBA- and NTF2-like domains to mediate the export of RNA cargo, but can move through the pores independently of these domains when free of RNA cargo.

Indexed as

Active Transport, Cell NucleusAnimalsATP-Binding Cassette TransportersBinding SitesCell FusionChlorocebus aethiopsCOS CellsHistocompatibility Antigens Class IHumansMiceMutationNIH 3T3 CellsNuclear PoreNucleocytoplasmic Transport ProteinsProtein Structure, TertiaryRNA, MessengerATP-Binding Cassette TransportersHistocompatibility Antigens Class INucleocytoplasmic Transport ProteinsNXT1 protein, humanRNA, Messengertransporter associated with antigen processing (TAP)

Identifiers

PMID16314397
PMCPMC1356601
OpenAlexW2101222176

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.