Evidence map›Paper›PMID 16313629›Full record

ArticleMolecular microbiology2005

Identification of novel Yap1p and Skn7p binding sites involved in the oxidative stress response of Saccharomyces cerevisiae.

Xin-Jian He, Jan S Fassler

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 86 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Screening and In Silico Analyses of the YeastFoods (Basel, Switzerland) · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Oxidative stress response pathways in fungi.Cellular and molecular life sciences : CMLS · 2022
    Review
  10. Article
  11. Article
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  13. Article
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Xin-Jian HeDepartment of Biological Sciences, University of Iowa, Iowa City, IA 52242, USA.
Jan S Fassler
University of Iowa · US

Funding

SIGNAL TRANSDUCTION BY A YEAST TWO COMPONENT REGULATORR01GM056719 · NIGMS · UNIVERSITY OF IOWA · PI FASSLER, JAN S. · 1998 to 2005
$1.7M
NIGMS NIH HHS GM56719NIGMS NIH HHS R01 GM056719
6 · The paper itself

Abstract

The Saccharomyces cerevisiae Yap1p and Skn7p transcription factors collaborate in the activation of oxidative stress response (OSR) genes. Although Yap1p and Skn7p oxidative stress response elements (YRE, OSRE) have been characterized and identified in some OSR genes, many OSR genes lack such elements. In this study, the complex, oxidative responsive, CCP1 promoter was used as a model to investigate the cis-acting elements responsible for activation by oxidative stress. In addition to consensus YRE and OSRE sequences, novel Yap1p and Skn7p binding sites were identified in the CCP1 promoter. These new sites were found to mediate Yap1p- and Skn7p-dependent activation of OSR genes including TSA1 and CTT1 previously thought to lack Yap1p and Skn7p binding sites. The novel YREs and OSREs were found to be enriched in the promoter regions of a set of 179 OSR genes. The widespread existence of novel Yap1p and Skn7p binding sites strongly suggest that direct binding of Yap1p and Skn7p is responsible for activation of many more OSR genes than previously believed.

Indexed as

Heat-Shock ResponseOxidative StressBase SequenceBinding SitesDNA-Binding ProteinsEnhancer Elements, GeneticGene Expression Regulation, FungalMolecular Sequence DataPromoter Regions, GeneticSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsDNA-Binding ProteinsSaccharomyces cerevisiae ProteinsSKN7 protein, S cerevisiaeTranscription FactorsYAP1 protein, S cerevisiae

Identifiers

PMID16313629
PMCPMC2916641
OpenAlexW2127433045

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.