Evidence map›Paper›PMID 16311596›Full record

ArticleNature genetics2005

A genome-wide RNA interference screen in Drosophila melanogaster cells for new components of the Hh signaling pathway.

Kent Nybakken, Steven A Vokes, Ting-Yi Lin, Andrew P McMahon, Norbert Perrimon

Abstract read
In one paragraph

Article in Nature genetics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 96 papers.

0numbers the graph read from it
0cells of the map it votes in
96citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

96 citing papers in PubMed, 192 citations in OpenAlex.

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  19. Article
  20. The emerging roles of phosphatases in Hedgehog pathway.Cell communication and signaling : CCS · 2017
    Review

36 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Kent NybakkenDepartment of Genetics, Harvard Medical School, 77 Avenue Louis Pasteur, Boston, Massachusetts 02115, USA. knybakke@receptor.med.harvard.edu
Steven A Vokes
Ting-Yi Lin
Andrew P McMahon
Norbert Perrimon
Harvard University · US

Funding

Heparan Sulphate Proteoglycan in DrosophilaF32GM064232 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI NYBAKKEN, KENT E · 2002 to 2003
$85k
NIGMS NIH HHS F32 GM064232
6 · The paper itself

Abstract

Members of the Hedgehog (Hh) family of signaling proteins are powerful regulators of developmental processes in many organisms and have been implicated in many human disease states. Here we report the results of a genome-wide RNA interference screen in Drosophila melanogaster cells for new components of the Hh signaling pathway. The screen identified hundreds of potential new regulators of Hh signaling, including many large protein complexes with pleiotropic effects, such as the coat protein complex I (COPI) complex, the ribosome and the proteasome. We identified the multimeric protein phosphatase 2A (PP2A) and two new kinases, the D. melanogaster orthologs of the vertebrate PITSLRE and cyclin-dependent kinase-9 (CDK9) kinases, as Hh regulators. We also identified a large group of constitutive and alternative splicing factors, two nucleoporins involved in mRNA export and several RNA-regulatory proteins as potent regulators of Hh signal transduction, indicating that splicing regulation and mRNA transport have a previously unrecognized role in Hh signaling. Finally, we showed that several of these genes have conserved roles in mammalian Hh signaling.

Indexed as

AnimalsDrosophila melanogasterDrosophila ProteinsGene Expression RegulationGenes, InsectGenome, InsectGenomicsHedgehog ProteinsInsect ProteinsPhosphoprotein PhosphatasesPhosphotransferasesProtein Phosphatase 2RNA InterferenceRNA, MessengerRNA SplicingSignal TransductionDrosophila ProteinsHedgehog Proteinshh protein, DrosophilaInsect ProteinsPhosphoprotein PhosphatasesPhosphotransferasesProtein Phosphatase 2RNA, Messengertws protein, Drosophila

Identifiers

PMID16311596
PMCPMC6429564
OpenAlexW2025567758

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.