Evidence map›Paper›PMID 1631157›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1992

Cloning and chromosomal location of human alpha 1(XVI) collagen.

T C Pan, R Z Zhang, M G Mattei, R Timpl, M L Chu

Abstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1992. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Review
  3. Collagens.Cell and tissue research · 2010
    Review
  4. Article
  5. Article
  6. Article
  7. hMSH2 forms specific mispair-binding complexes with hMSH3 and hMSH6.Proceedings of the National Academy of Sciences of the United States of America · 1996
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Characterization of an intronless collagen gene family in the marine sponge Microciona prolifera.Proceedings of the National Academy of Sciences of the United States of America · 1993
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

T C PanDepartment of Biochemistry, Jefferson Institute of Molecular Medicine, Thomas Jefferson University, Philadelphia, PA 19107.
R Z Zhang
M G Mattei
R Timpl
M L Chu

Funding

STRUCTURE OF TYPE VI COLLAGEN AND ITS ROLE IN DISEASER01AR038912 · NIAMS · THOMAS JEFFERSON UNIVERSITY · PI CHU, MON-LI H. · 1987 to 2004
$1.6M
IMPROVED PERFORMANCE OF ORTHOPEDIC DEVICES BY PSIIR43AR039923 · NIAMS · APPLIED SCIENCE AND TECHNOLOGY, INC. · PI POST, RICHARD S · 1989 to 1989
–
NIAMS NIH HHS AR38912NIAMS NIH HHS AR39923
6 · The paper itself

Abstract

We have characterized cDNA clones that encode a newly discovered collagenous polypeptide. A 4-kilobase (kb) cDNA clone was initially isolated by screening a human fibroblast cDNA library with a probe encoding the collagenous domain of the human alpha 3(VI) collagen. Subsequent screening of another fibroblast cDNA library yielded overlapping clones having a total length of 5.4 kb, which contained an open reading frame of 1603 amino acids including a 21-amino acid signal peptide. The predicted polypeptide consists of 10 collagenous domains 15-422 amino acids long, which were interspersed with 11 noncollagenous (NC) domains. Except for a large N-terminal NC11 domain of 312 residues, most of the NC domains were short (11-39 residues) and cysteine-rich. The overall structural arrangement differed significantly from other known collagen chains. Further analysis indicated that the deduced polypeptide exhibited several structural features characteristically seen in members of the fibril-associated collagen, types IX, XII, and XIV. In addition, the cysteine-rich motifs in the NC domains resembled those found in the cuticle collagen of Caenorhabditis elegans. Northern blot analyses showed hybridization of the cDNA to a 5.5-kb mRNA in human fibroblasts and keratinocytes. The gene was localized by in situ hybridization to band p34-35 of human chromosome 1. The data clearly support the conclusion that the cDNA encodes a collagen chain that has not been previously described. We suggest that the cDNA clones encode the alpha 1 chain of type XVI collagen.

Indexed as

Amino Acid SequenceBase SequenceChromosome MappingCloning, MolecularCollagenDNAGene ExpressionHumansMolecular Sequence DataRestriction MappingRNA, MessengerSequence AlignmentCollagenDNARNA, Messenger

Identifiers

PMID1631157
PMCPMC49542

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.