Evidence map›Paper›PMID 16308568›Full record

ArticleThe EMBO journal2005

P-TEFb is not an essential elongation factor for the intronless human U2 snRNA and histone H2b genes.

Joanne Medlin, Andrew Scurry, Alice Taylor, Fan Zhang, B Matija Peterlin, Shona Murphy

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The EMBO journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 83 citations in OpenAlex.

  1. Review
  2. Article
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  13. Overview of CDK9 as a target in cancer research.Cell cycle (Georgetown, Tex.) · 2016
    Review
  14. Review
  15. Article
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  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Joanne MedlinSir William Dunn School of Pathology, Oxford, UK.
Andrew Scurry
Alice Taylor
Fan Zhang
B Matija Peterlin
Shona Murphy
University of Oxford · GBUniversity of California, San Francisco · US

Funding

TAT TransactivationR01AI049104 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PETERLIN, BORIS MATIJA · 2001 to 2015
$5.3M
NIAID NIH HHS R01 AI049104NIAID NIH HHS R01 AI49104Wellcome Trust
6 · The paper itself

Abstract

Phosphorylation of Ser2 of the heptapeptide repeat of the CTD of mammalian pol II by P-TEFb is associated with productive elongation of transcription of protein-coding genes. Here, we show that the CTD of pol II transcribing the human U2 snRNA genes is phosphorylated on Ser2 in vivo and that both the CDK9 kinase and cyclin T components of P-TEFb are required for cotranscriptional recognition of the 3' box RNA 3' end processing signal. However, inhibitors of CDK9 do not affect transcription of the U2 genes, indicating that P-TEFb functions exclusively as an RNA processing factor in expression of these relatively short, intronless genes. We also show that inhibition of CDK9 does not adversely affect either transcription of an intron-less, replication-activated histone H2b gene or recognition of the histone gene-specific U7-dependent RNA 3' end formation signal. These results emphasize that the role of P-TEFb as an activator of transcription elongation can be separated from its role in RNA processing and that neither function is universally required for expression of mammalian pol II-dependent genes.

Indexed as

IntronsAmino Acid SequenceCyclin-Dependent Kinase 9DNA Polymerase IIEnzyme InhibitorsHistonesHumansMolecular Sequence DataMutationPhosphorylationPositive Transcriptional Elongation Factor BProtein KinasesProtein Structure, TertiaryRNA PrecursorsRNA, Small NuclearSerinecarboxy-terminal domain kinaseCDK9 protein, humanCyclin-Dependent Kinase 9DNA Polymerase IIEnzyme InhibitorsHistonesPositive Transcriptional Elongation Factor BProtein KinasesRNA PrecursorsRNA, Small NuclearSerineU2 small nuclear RNA

Identifiers

PMID16308568
PMCPMC1356315
OpenAlexW2121251630

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.