Evidence map›Paper›PMID 16307367›Full record

ArticlePlant molecular biology2005

Identification of NPR1-dependent and independent genes early induced by salicylic acid treatment in Arabidopsis.

Francisca Blanco, Virginia Garretón, Nicolas Frey, Calixto Dominguez, Tomás Pérez-Acle, Dominique Van der Straeten, Xavier Jordana, Loreto Holuigue

Open access · greenAbstract read
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In one paragraph

Article in Plant molecular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
6.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 105 citations in OpenAlex.

  1. Article
  2. Article
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  4. Article
  5. Re-engineering a lost trait:bioRxiv : the preprint server for biology · 2023
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  6. Article
  7. Isolation ofGenes · 2022
    Article
  8. Article
  9. Article
  10. Disruption of the NFrontiers in plant science · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Deciphering the Binding of Salicylic Acid toInternational journal of molecular sciences · 2020
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Francisca BlancoDepartamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, P.O. Box 114-D, Santiago, Chile.
Virginia Garretón
Nicolas Frey
Calixto Dominguez
Tomás Pérez-Acle
Dominique Van der Straeten
Xavier Jordana
Loreto Holuigue
Pontificia Universidad Católica de Chile · CLGhent University · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Salicylic acid (SA) plays a crucial role in stress resistance in plants by modifying the expression of a battery of genes. In this paper, we report the identification of a group of early SA-regulated genes of Arabidopsis (activated between 0.5-2.5 h), using the cDNA-amplified fragment length polymorphism technique (cDNA-AFLP). Using 128 different primer combinations, we identified several genes based on their differential expression during SA treatment. Among these, we identified 12 genes up-regulated by SA whose patterns of induction were confirmed by Northern analysis. The identified genes can be grouped into two functional groups: Group 1: genes involved in cell protection (i.e. glycosyltransferases, glutathion S-transferases), and Group 2: genes involved in signal transduction (protein kinases and transcription factors). We also evaluated NPR1 requirement for the induction of the 12 up-regulated genes, and found that only those belonging to Group 2 require this co-activator for their expression. In silico analysis of the promoter sequences of the up-regulated genes, allowed us to identify putative cis-elements over-represented in these genes. Interestingly, as-1-like elements, previously characterized as SA-responsive elements, were specifically over-represented in Group 1 genes. The identification of early SA-regulated genes is an important step towards understanding the complex role of this hormone in plant stress resistance.

Indexed as

Gene Expression Regulation, PlantAmino Acid MotifsArabidopsisArabidopsis ProteinsBlotting, NorthernCyclopentanesDNA, ComplementaryDNA PrimersGene Expression RegulationGlutathione TransferaseGlycosyltransferasesKineticsOligonucleotidesOxylipinsPolymorphism, Restriction Fragment LengthPromoter Regions, GeneticArabidopsis ProteinsCyclopentanesDNA, ComplementaryDNA PrimersGlutathione TransferaseGlycosyltransferasesjasmonic acidNPR1 protein, ArabidopsisOligonucleotidesOxylipinsReactive Oxygen SpeciesRNASalicylic AcidTranscription Factors

Identifiers

PMID16307367
OpenAlexW2008251750

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.