Evidence map›Paper›PMID 16306993›Full record

ArticleNature2005

Design principles of a bacterial signalling network.

Markus Kollmann, Linda Løvdok, Kilian Bartholomé, Jens Timmer, Victor Sourjik

Abstract read
PubMed Publisher
In one paragraph

Article in Nature, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 141 papers.

0numbers the graph read from it
0cells of the map it votes in
141citing papers in PubMed
7.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

141 citing papers in PubMed, 301 citations in OpenAlex.

  1. Growth-dependent sensory bet-hedging enhances collective navigation.bioRxiv : the preprint server for biology · 2026
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  6. Strong delayed negative feedback.Frontiers in network physiology · 2024
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  13. Collective self-optimization of communicating active particles.Proceedings of the National Academy of Sciences of the United States of America · 2021
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  14. Ultrasensitivity and bistability in covalent-modification cycles with positive autoregulation.Proceedings. Mathematical, physical, and engineering sciences · 2021
    Article
  15. Non-Genetic Diversity in Chemosensing and Chemotactic Behavior.International journal of molecular sciences · 2021
    Review
  16. Article
  17. A Multi-Scale Approach to ModelingEntropy (Basel, Switzerland) · 2020
    Article
  18. Article
  19. Post-Transcriptional Noise Control.BioEssays : news and reviews in molecular, cellular and developmental biology · 2019
    Article
  20. Article

81 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Markus KollmannInstitut für Physik, Universität Freiburg, Hermann-Herder-Str. 3, D-79104 Freiburg, Germany. markus.kollmann@fdm.uni-freiburg.de
Linda Løvdok
Kilian Bartholomé
Jens Timmer
Victor Sourjik
University of Freiburg · DEHeidelberg University · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cellular biochemical networks have to function in a noisy environment using imperfect components. In particular, networks involved in gene regulation or signal transduction allow only for small output tolerances, and the underlying network structures can be expected to have undergone evolution for inherent robustness against perturbations. Here we combine theoretical and experimental analyses to investigate an optimal design for the signalling network of bacterial chemotaxis, one of the most thoroughly studied signalling networks in biology. We experimentally determine the extent of intercellular variations in the expression levels of chemotaxis proteins and use computer simulations to quantify the robustness of several hypothetical chemotaxis pathway topologies to such gene expression noise. We demonstrate that among these topologies the experimentally established chemotaxis network of Escherichia coli has the smallest sufficiently robust network structure, allowing accurate chemotactic response for almost all individuals within a population. Our results suggest that this pathway has evolved to show an optimal chemotactic performance while minimizing the cost of resources associated with high levels of protein expression. Moreover, the underlying topological design principles compensating for intercellular variations seem to be highly conserved among bacterial chemosensory systems.

Indexed as

ChemotaxisSignal TransductionAdaptation, PhysiologicalComputer SimulationEscherichia coliEscherichia coli ProteinsFeedback, PhysiologicalGene Expression Regulation, BacterialModels, BiologicalPhosphorylationResearch DesignTranscription, GeneticEscherichia coli Proteins

Identifiers

PMID16306993
OpenAlexW2117594322

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.