Evidence map›Paper›PMID 16306148›Full record

ArticlePlant physiology2005

Novel markers of xylogenesis in zinnia are differentially regulated by auxin and cytokinin.

Edouard Pesquet, Philippe Ranocha, Sylvain Legay, Catherine Digonnet, Odile Barbier, Magalie Pichon, Deborah Goffner

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Plant physiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 98 citations in OpenAlex.

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  12. Impairment of TomatoFrontiers in plant science · 2021
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  13. High-order mutants reveal an essential requirement for peroxidases but not laccases in Casparian strip lignification.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Edouard PesquetUnité Mixte de Recherche, Centre National de la Recherche Scientifique/Université Paul Sabatier 5546, Surfaces Cellulaires et Signalisation chez les Végétaux, Pôle de Biotechnologie Végétale, 31326 Castanet, Tolosan, France.
Philippe Ranocha
Sylvain Legay
Catherine Digonnet
Odile Barbier
Magalie Pichon
Deborah Goffner
Université Toulouse III - Paul Sabatier · FRCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The characterization of in vitro xylogenic cultures of zinnia (Zinnia elegans) has led to major discoveries in the understanding of xylem formation in plants. We have constructed and characterized a subtractive library from zinnia cultures enriched in genes that are specifically expressed at the onset of secondary wall deposition and tracheary element (TE) programmed cell death. This Late Xylogenesis Library (LXL) consisted of 236 nonredundant cDNAs, 77% of which encoded novel sequences in comparison with the 17,622 expressed sequence tag sequences publicly available. cDNA arrays were constructed to examine dynamic global gene expression during the course of TE formation. As a first step in dissecting auxin and cytokinin signaling during TE differentiation, macroarrays were probed with cDNAs from cells cultured in different hormonal conditions. Fifty-one percent of the LXL genes were induced by either auxin or cytokinin individually, the large majority by auxin. To determine the potential involvement of these categories of genes in TE differentiation, multiplex in situ-reverse transcription-PCR was performed on cells for two genes encoding putative cell wall proteins: Gibberellin stimulated transcript-1, induced by auxin alone, and expansin 5, induced by cytokinin alone. All transcriptionally active TEs expressed both genes, indicating that, although these genes may not be considered as specific markers for TE differentiation per se, they are nevertheless an integral part of TE differentiation program. Among the non-TE population, four different gene expression-based cell types could be distinguished. Together, these results demonstrate the underlying complexity of hormonal perception and the existence of several different cell types in in vitro TE cell cultures.

Indexed as

ApoptosisArabidopsisAsteraceaeBase SequenceCell WallComputational BiologyCytokininsDNA, PlantGene Expression ProfilingGene Expression Regulation, PlantGene LibraryGenes, PlantGenomicsIndoleacetic AcidsMolecular Sequence DataOligonucleotide Array Sequence AnalysisCytokininsDNA, PlantIndoleacetic AcidsPlant Growth Regulators

Identifiers

PMID16306148
PMCPMC1310562
OpenAlexW2114589443

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.