Evidence map›Paper›PMID 16301539›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

Fcp1 directly recognizes the C-terminal domain (CTD) and interacts with a site on RNA polymerase II distinct from the CTD.

Man-Hee Suh, Ping Ye, Mincheng Zhang, Stéphane Hausmann, Stewart Shuman, Averell L Gnatt, Jianhua Fu

Open access · greenAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Man-Hee SuhDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.
Ping Ye
Mincheng Zhang
Stéphane Hausmann
Stewart Shuman
Averell L Gnatt
Jianhua Fu
Kettering University · USUniversity of Maryland, Baltimore · USCornell University · US

Funding

RNA Polymerase II-Fctr Complexes in Transcription CntrolR01GM064651 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI FU, JIANHUA · 2002 to 2008
$2.1M
NIGMS NIH HHS GM064651NIGMS NIH HHS R01 GM064651
6 · The paper itself

Abstract

Fcp1 is an essential protein phosphatase that hydrolyzes phosphoserines within the C-terminal domain (CTD) of the largest subunit of RNA polymerase II (Pol II). Fcp1 plays a major role in the regulation of CTD phosphorylation and, hence, critically influences the function of Pol II throughout the transcription cycle. The basic understanding of Fcp1-CTD interaction has remained ambiguous because two different modes have been proposed: the "dockingsite" model versus the "distributive" mechanism. Here we demonstrate biochemically that Fcp1 recognizes and dephosphorylates the CTD directly, independent of the globular non-CTD part of the Pol II structure. We point out that the recognition of CTD by the phosphatase is based on random access and is not driven by Pol II conformation. Results from three different types of experiments reveal that the overall interaction between Fcp1 and Pol II is not stable but dynamic. In addition, we show that Fcp1 also interacts with a region on the polymerase distinct from the CTD. We emphasize that this non-CTD site is functionally distinct from the docking site invoked previously as essential for the CTD phosphatase activity of Fcp1. We speculate that Fcp1 interaction with the non-CTD site may mediate its stimulatory effect on transcription elongation reported previously.

Indexed as

Chromatography, GelElectrophoresis, Polyacrylamide GelGlutathione TransferaseHeparinPhosphoprotein PhosphatasesPhosphorylationProtein BindingProtein Structure, TertiaryRNA Polymerase IISaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription, Geneticcarboxy-terminal domain phosphataseGlutathione TransferaseHeparinPhosphoprotein PhosphatasesRNA Polymerase IISaccharomyces cerevisiae Proteins

Identifiers

PMID16301539
PMCPMC1297677
OpenAlexW2123178605

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.