Evidence map›Paper›PMID 16291662›Full record

ArticleJournal of bacteriology2005

Vibrio cholerae ToxT independently activates the divergently transcribed aldA and tagA genes.

Jeffrey H Withey, Victor J Dirita

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Structural basis for virulence regulation inCommunications biology · 2019
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. The complexity of ToxT-dependent transcription in Vibrio cholerae.The Indian journal of medical research · 2011
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 2 countries.

Jeffrey H WitheyUnit for Laboratory Animal Medicine, University of Michigan Medical School, Ann Arbor, 48109-0614, USA.
Victor J Dirita
Institute of Laboratory Animal Science · CN

Funding

TOXT AND REGULATION OF VIBRIO CHOLERAE VIRULENCER01AI031645 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DIRITA, VICTOR J. · 1996 to 2000
$195k
Structure and Function of Vibrio cholerae ToxTF32AI051074 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WITHEY, JEFFREY H · 2002 to 2004
$143k
TOXT AND REGULATION OF VIBRIO CHOLERAE VIRULENCER29AI031645 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DIRITA, VICTOR J. · 1991 to 1995
–
NIAID NIH HHS 1 F32 AI51074NIAID NIH HHS AI31645NIAID NIH HHS F32 AI051074
6 · The paper itself

Abstract

The Vibrio cholerae ToxT regulon includes the genes encoding cholera toxin (CT) and the toxin-coregulated pilus (TCP), which are the major virulence factors required for causing cholera disease and colonizing the upper small intestine of the host, respectively. The genes encoding CT, ctxAB, and the genes encoding the components of the TCP, tcpA to tcpJ, are organized within operons, upstream of which are DNA binding sites for the transcriptional activator ToxT. ToxT is a member of the large AraC/XylS family of transcriptional regulators and also activates transcription of five other genes whose roles in V. cholerae pathogenesis, if any, are poorly understood. acfA and acfD are divergently transcribed genes required for efficient colonization of the intestine. Transcriptional activation of acfA and acfD requires a pair of central ToxT binding sites in an inverted-repeat configuration for ToxT-directed transcription of both genes. tcpI has an unknown role in pathogenesis. aldA and tagA are divergently transcribed genes that also have unknown roles in pathogenesis. In this study, we map the aldA and tagA promoters and identify the ToxT binding sites upstream of each gene. Our results suggest that two ToxT binding sites in an inverted-repeat configuration are required for ToxT-directed transcription of tagA and that a single ToxT binding site is required for ToxT-directed transcription of aldA. Furthermore, to direct transcription of tagA and aldA, ToxT uses independent binding regions upstream of each gene, in contrast to what we previously found for the divergently transcribed acfA and acfD genes, which share ToxT binding sites between the two genes.

Indexed as

Gene Expression Regulation, BacterialTranscription, GeneticAldehyde OxidoreductasesBacterial ProteinsBase SequenceDNA, BacterialDNA-Binding ProteinsFimbriae ProteinsGenes, BacterialMolecular Sequence DataSequence AlignmentTranscriptional ActivationTranscription FactorsVibrio choleraeAldehyde OxidoreductasesBacterial ProteinsDNA, BacterialDNA-Binding ProteinsFimbriae ProteinsTcpA protein, Vibrio choleraetcpN protein, Vibrio choleraeTranscription Factors

Identifiers

PMID16291662
PMCPMC1291258
OpenAlexW2148435765

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.