Evidence map›Paper›PMID 16291645›Full record

ArticleGenes & development2005

Homologous recombination and nonhomologous end-joining repair pathways regulate fragile site stability.

Michal Schwartz, Eitan Zlotorynski, Michal Goldberg, Efrat Ozeri, Ayelet Rahat, Carlos le Sage, Benjamin P C Chen, David J Chen, Reuven Agami, Batsheva Kerem

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 126 citations in OpenAlex.

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  19. Identification of Fhit as a post-transcriptional effector of Thymidine Kinase 1 expression.Biochimica et biophysica acta. Gene regulatory mechanisms · 2017
    Article
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13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Michal SchwartzDepartment of Genetics, The Life Sciences Institute, The Hebrew University, Jerusalem, Israel.
Eitan Zlotorynski
Michal Goldberg
Efrat Ozeri
Ayelet Rahat
Carlos le Sage
Benjamin P C Chen
David J Chen
Reuven Agami
Batsheva Kerem
The University of Texas Southwestern Medical Center · USHebrew University of Jerusalem · ILThe Netherlands Cancer Institute · NLRadiation Oncology Associates · US

Funding

Roles of DNA PK in DNA Double Strand Break RepairR37CA050519 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI CHEN, DAVID J · 2003 to 2011
$3.5M
ROLES OF DNA PK IN DNA DOUBLE STRAND BREAK REPAIRR01CA050519 · NCI · UNIVERSITY OF CALIF-LOS ALAMOS NAT LAB · PI CHEN, DAVID J · 1989 to 2001
$946k
NCI NIH HHS CA50519NCI NIH HHS R01 CA050519NCI NIH HHS R37 CA050519
6 · The paper itself

Abstract

Common fragile sites are specific loci that form gaps and constrictions on metaphase chromosomes exposed to replication stress, which slows DNA replication. These sites have a role in chromosomal rearrangements in tumors; however, the molecular mechanism of their expression is unclear. Here we show that replication stress leads to focus formation of Rad51 and phosphorylated DNA-PKcs, key components of the homologous recombination (HR) and nonhomologous end-joining (NHEJ), double-strand break (DSB) repair pathways, respectively. Down-regulation of Rad51, DNA-PKcs, or Ligase IV, an additional component of the NHEJ repair pathway, leads to a significant increase in fragile site expression under replication stress. Replication stress also results in focus formation of the DSB markers, MDC1 and gammaH2AX. These foci colocalized with those of Rad51 and phospho-DNA-PKcs. Furthermore, gammaH2AX and phospho-DNA-PKcs foci were localized at expressed fragile sites on metaphase chromosomes. These findings suggest that DSBs are formed at common fragile sites as a result of replication perturbation. The repair of these breaks by both HR and NHEJ pathways is essential for chromosomal stability at these sites.

Indexed as

Adaptor Proteins, Signal TransducingCell Cycle ProteinsCell Line, TumorChromosome Fragile SitesDNA-Activated Protein KinaseDNA-Binding ProteinsDNA Ligase ATPDNA LigasesDNA RepairHeLa CellsHistonesHumansMetaphaseNuclear ProteinsPhosphorylationRad51 RecombinaseAdaptor Proteins, Signal TransducingCell Cycle ProteinsDNA-Activated Protein KinaseDNA-Binding ProteinsDNA Ligase ATPDNA LigasesH2AX protein, humanHistonesMDC1 protein, humanNuclear ProteinsPRKDC protein, humanRad51 RecombinaseTrans-Activators

Identifiers

PMID16291645
PMCPMC1283964
OpenAlexW2102570250

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.