Evidence map›Paper›PMID 16286657›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2005

Chromatin domain activation via GATA-1 utilization of a small subset of dispersed GATA motifs within a broad chromosomal region.

Hogune Im, Jeffrey A Grass, Kirby D Johnson, Shin-Il Kim, Meghan E Boyer, Anthony N Imbalzano, James J Bieker, Emery H Bresnick

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 127 citations in OpenAlex.

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26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Hogune ImDepartment of Pharmacology, University of Wisconsin Medical School, Madison, WI 53706, USA.
Jeffrey A Grass
Kirby D Johnson
Shin-Il Kim
Meghan E Boyer
Anthony N Imbalzano
James J Bieker
Emery H Bresnick
University of Massachusetts Chan Medical School · USIcahn School of Medicine at Mount Sinai · US

Funding

Function of Putative Determinant in HematopoiesisR01DK046865 · NIDDK · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI JAMES J BIEKER · 1993 to 2026
$11.2M
Transcriptional Control of Hemoglobin Synthesis and Erythrocyte DevelopmentR01DK050107 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI Emery H. Bresnick · 1996 to 2026
$6.1M
Transcriptional Control of Hemoglobin SynthesisR37DK050107 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI BRESNICK, EMERY H · 2011 to 2020
$3.5M
COACTIVATORS THAT MEDIATE BETA GLOBIN LCR FUNCTIONR01DK055700 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI BRESNICK, EMERY H. · 1999 to 2006
$1.8M
GATA Factor-Specific Transcriptional RegulationK01DK069488 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI JOHNSON, KIRBY D · 2005 to 2007
$312k
NIDDK NIH HHS DK 46865NIDDK NIH HHS DK 50107NIDDK NIH HHS DK 55700NIDDK NIH HHS DK K01 69488NIDDK NIH HHS R01 DK046865NIDDK NIH HHS R01 DK050107NIDDK NIH HHS R01 DK055700NIDDK NIH HHS R37 DK050107PHS HHS T32 NL 07899
6 · The paper itself

Abstract

Cis elements that mediate transcription factor binding are abundant within genomes, but the rules governing occupancy of such motifs in chromatin are not understood. The transcription factor GATA-1 that regulates red blood cell development binds with high affinity to GATA motifs, and initial studies suggest that these motifs are often unavailable for occupancy in chromatin. Whereas GATA-2 regulates the differentiation of all blood cell lineages via GATA motif binding, the specificity of GATA-2 chromatin occupancy has not been studied. We found that conditionally active GATA-1 (ER-GATA-1) and GATA-2 occupy only a small subset of the conserved GATA motifs within the murine beta-globin locus. Kinetic analyses in GATA-1-null cells indicated that ER-GATA-1 preferentially occupied GATA motifs at the locus control region (LCR), in which chromatin accessibility is largely GATA-1-independent. Subsequently, ER-GATA-1 increased promoter accessibility and occupied the betamajor promoter. ER-GATA-1 increased erythroid Krüppel-like factor and SWI/SNF chromatin remodeling complex occupancy at restricted LCR sites. These studies revealed three phases of beta-globin locus activation: GATA-1-independent establishment of specific chromatin structure features, GATA-1-dependent LCR complex assembly, and GATA-1-dependent promoter complex assembly. The differential utilization of dispersed GATA motifs therefore establishes spatial/temporal regulation and underlies the multistep activation mechanism.

Indexed as

AnimalsCell LineChromatinChromosomesConserved SequenceDNADNA HelicasesGATA1 Transcription FactorGATA2 Transcription FactorGlobinsKruppel-Like Transcription FactorsMiceNuclear ProteinsPromoter Regions, GeneticTranscription FactorsTranscription, GeneticChromatinDNADNA Helicaseserythroid Kruppel-like factorGata1 protein, mouseGATA1 Transcription FactorGata2 protein, mouseGATA2 Transcription FactorGlobinsKruppel-Like Transcription FactorsNuclear ProteinsSmarca4 protein, mouseTranscription Factors

Identifiers

PMID16286657
PMCPMC1287986
OpenAlexW2119375414

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.