Evidence map›Paper›PMID 16283388›Full record

ArticleHuman genetics2006

Population stratification confounds genetic association studies among Latinos.

Shweta Choudhry, Natasha E Coyle, Hua Tang, Keyan Salari, Denise Lind, Suzanne L Clark, Hui-Ju Tsai, Mariam Naqvi, Angie Phong, Ngim Ung and 16 more

Abstract read
PubMed Publisher
In one paragraph

Article in Human genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 123 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
123citing papers in PubMed, 1 pooled it
17.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

123 citing papers in PubMed, 1 synthesis or guideline pooled it, 260 citations in OpenAlex.

  1. Pooled it
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  13. Novel Variants inFrontiers in neurology · 2020
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63 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 5 institutions in 2 countries.

Shweta ChoudhryUniversity of California, San Francisco, 94143-0833, USA.
Natasha E Coyle
Hua Tang
Keyan Salari
Denise Lind
Suzanne L Clark
Hui-Ju Tsai
Mariam Naqvi
Angie Phong
Ngim Ung
Henry Matallana
Pedro C Avila
Jesus Casal
Alfonso Torres
Sylvette Nazario
Richard Castro
Natalie C Battle
Eliseo J Perez-Stable
Pui-Yan Kwok
Dean Sheppard
Mark D Shriver
William Rodriguez-Cintron
Neil Risch
Elad Ziv
Esteban Gonzàlez Burchard
Genetics of Asthma in Latino Americans GALA Study
University of California, San Francisco · USSan Francisco General Hospital · USUniversity of Puerto Rico, Medical Sciences Campus · PRFred Hutch Cancer Center · USPennsylvania State University · US

Funding

THE PHARMACOGENETICS OF ASTHMA TREATMENTU01HL065899 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI TANTISIRA, KELAN G, WEISS, SCOTT T · 2000 to 2014
$38.5M
PHARMACOGENETICS OF MEMBRANE TRANSPORTERSU01GM061390 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GIACOMINI, KATHLEEN M · 2000 to 2009
$29.2M
ZIDOVUDINE &LAMIVUDINE &NEVIRAPINE COMBINATION THERAPY IN HIV 1 INFM01RR001271 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KESSLER, DAVID A · 1985 to 2006
$22.7M
WELFARE REFORM AND THE PERINATAL HEALTH OF IMMIGRANTSM01RR000083 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KESSLER, DAVID A · 1985 to 2006
$21.1M
RESOURCE CENTER FOR AGING RESEARCH IN DIVERSE POPULATIONP30AG015272 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LEAH S KARLINER · 1997 to 2026
$19.5M
Pharmacogenomics of Membrane TransportersU19GM061390 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KWOK, PUI-YAN · 2010 to 2014
$16.3M
UCSF-KAISER WOMEN'S HEALTH INTERDISCIPLINARY SCHOLARSHIPK12AR047659 · NIAMS · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI GRADY, DEBORAH G · 2000 to 2004
$2.5M
ASTHMA CLINICAL RESEARCH NETWORK CENTERU10HL051823 · NHLBI · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI BOUSHEY, HOMER A · 1993 to 2002
$2.2M
Genetics of Asthma In Latino AmericansK23HL004464 · NHLBI · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI BURCHARD, ESTEBAN GONZALEZ · 2001 to 2005
$609k
NCRR NIH HHS 3M01RR000083-38S30488NCRR NIH HHS M01RR00083-41NCRR NIH HHS M01 RR01271NHLBI NIH HHS HL07185NHLBI NIH HHS HL51823NHLBI NIH HHS K23 HL04464NHLBI NIH HHS U01-HL 65899NIAMS NIH HHS K12 AR47659NIA NIH HHS P30-AG15272NIGMS NIH HHS GM61390
6 · The paper itself

Abstract

In the United States, asthma prevalence and mortality are the highest among Puerto Ricans and the lowest among Mexicans. Case-control association studies are a powerful strategy for identifying genes of modest effect in complex diseases. However, studies of complex disorders in admixed populations such as Latinos may be confounded by population stratification. We used ancestry informative markers (AIMs) to identify and correct for population stratification among Mexican and Puerto Rican subjects participating in case-control studies of asthma. Three hundred and sixty-two subjects with asthma (Mexican: 181, Puerto Rican: 181) and 359 ethnically matched controls (Mexican: 181, Puerto Rican: 178) were genotyped for 44 AIMs. We observed a greater than expected degree of association between pairs of AIMs on different chromosomes in Mexicans (P < 0.00001) and Puerto Ricans (P < 0.00002) providing evidence for population substructure and/or recent admixture. To assess the effect of population stratification on association studies of asthma, we measured differences in genetic background of cases and controls by comparing allele frequencies of the 44 AIMs. Among Puerto Ricans but not in Mexicans, we observed a significant overall difference in allele frequencies between cases and controls (P = 0.0002); of 44 AIMs tested, 8 (18%) were significantly associated with asthma. However, after adjustment for individual ancestry, only two of these markers remained significantly associated with the disease. Our findings suggest that empirical assessment of the effects of stratification is critical to appropriately interpret the results of case-control studies in admixed populations.

Indexed as

Confounding Factors, EpidemiologicGenetics, PopulationAllelesChromosome MappingGene FrequencyGenetic MarkersGenotypeHispanic or LatinoHumansMexicoPuerto RicoGenetic Markers

Identifiers

PMID16283388
OpenAlexW2028818536

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.