Evidence map›Paper›PMID 16282588›Full record

ArticleNucleic acids research2005

T:G mismatch-specific thymine-DNA glycosylase (TDG) as a coregulator of transcription interacts with SRC1 family members through a novel tyrosine repeat motif.

Marie J Lucey, Dongsheng Chen, Jorge Lopez-Garcia, Stephen M Hart, Fladia Phoenix, Rajai Al-Jehani, John P Alao, Roger White, Karin B Kindle, Régine Losson and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
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  3. Review
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  9. Article
  10. Article
  11. Article
  12. DNA demethylation by TDG.Epigenomics · 2012
    Review
  13. Article
  14. Active DNA demethylation in plants and animals.Cold Spring Harbor symposia on quantitative biology · 2012
    Review
  15. Article
  16. Article
  17. Article
  18. Article
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 1 institution in 1 country.

Marie J LuceyDepartment of Oncology, Imperial College London, Du Cane Road, London, W12 0NN, UK.
Dongsheng Chen
Jorge Lopez-Garcia
Stephen M Hart
Fladia Phoenix
Rajai Al-Jehani
John P Alao
Roger White
Karin B Kindle
Régine Losson
Pierre Chambon
Malcolm G Parker
Primo Schär
David M Heery
Lakjaya Buluwela
Simak Ali
Imperial College London · GB

Funding

Wellcome Trust
6 · The paper itself

Abstract

Gene activation involves protein complexes with diverse enzymatic activities, some of which are involved in chromatin modification. We have shown previously that the base excision repair enzyme thymine DNA glycosylase (TDG) acts as a potent coactivator for estrogen receptor-alpha. To further understand how TDG acts in this context, we studied its interaction with known coactivators of nuclear receptors. We find that TDG interacts in vitro and in vivo with the p160 coactivator SRC1, with the interaction being mediated by a previously undescribed motif encoding four equally spaced tyrosine residues in TDG, each tyrosine being separated by three amino acids. This is found to interact with two motifs in SRC1 also containing tyrosine residues separated by three amino acids. Site-directed mutagenesis shows that the tyrosines encoded in these motifs are critical for the interaction. The related p160 protein TIF2 does not interact with TDG and has the altered sequence, F-X-X-X-Y, at the equivalent positions relative to SRC1. Substitution of the phenylalanines to tyrosines is sufficient to bring about interaction of TIF2 with TDG. These findings highlight a new protein-protein interaction motif based on Y-X-X-X-Y and provide new insight into the interaction of diverse proteins in coactivator complexes.

Indexed as

Amino Acid MotifsAmino Acid SequenceAnimalsChlorocebus aethiopsCOS CellsHistone AcetyltransferasesHumansMolecular Sequence DataNuclear Receptor Coactivator 1Repetitive Sequences, Amino AcidThymine DNA GlycosylaseTrans-ActivatorsTranscription FactorsTyrosineHistone AcetyltransferasesNCOA1 protein, humanNuclear Receptor Coactivator 1Thymine DNA GlycosylaseTrans-ActivatorsTranscription FactorsTyrosine

Identifiers

PMID16282588
PMCPMC1283525
OpenAlexW2120358508

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.