Evidence map›Paper›PMID 16281059›Full record

ArticleThe EMBO journal2005

Structure of a central stalk subunit F of prokaryotic V-type ATPase/synthase from Thermus thermophilus.

Hisayoshi Makyio, Ryota Iino, Chiyo Ikeda, Hiromi Imamura, Masatada Tamakoshi, Momi Iwata, Daniela Stock, Ricardo A Bernal, Elisabeth P Carpenter, Masasuke Yoshida and 2 more

Abstract read
In one paragraph

Article in The EMBO journal, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Population structure and gene flux ofMicrobial genomics · 2025
    Article
  2. Article
  3. Article
  4. Article
  5. Cryo-EM studies of the rotary HBiophysics and physicobiology · 2019
    Review
  6. Article
  7. Cryo EM structure of intact rotary HNature communications · 2018
    Article
  8. Rotation of artificial rotor axles in rotary molecular motors.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Crystal structure of the central axis DF complex of the prokaryotic V-ATPase.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Hisayoshi MakyioATP System Project, Exploratory Research for Advanced Technology, Japan Science and Technology Agency, Yokohama, Japan.
Ryota Iino
Chiyo Ikeda
Hiromi Imamura
Masatada Tamakoshi
Momi Iwata
Daniela Stock
Ricardo A Bernal
Elisabeth P Carpenter
Masasuke Yoshida
Ken Yokoyama
So Iwata

Funding

Biotechnology and Biological Sciences Research Council BBS/B/06458
6 · The paper itself

Abstract

The crystal structure of subunit F of vacuole-type ATPase/synthase (prokaryotic V-ATPase) was determined to of 2.2 A resolution. The subunit reveals unexpected structural similarity to the response regulator proteins that include the Escherichia coli chemotaxis response regulator CheY. The structure was successfully placed into the low-resolution EM structure of the prokaryotic holo-V-ATPase at a location indicated by the results of crosslinking experiments. The crystal structure, together with the single-molecule analysis using fluorescence resonance energy transfer, showed that the subunit F exhibits two conformations, a 'retracted' form in the absence and an 'extended' form in the presence of ATP. Our results postulated that the subunit F is a regulatory subunit in the V-ATPase.

Indexed as

Protein Structure, TertiaryAmino Acid SequenceBacterial ProteinsCrystallography, X-RayHoloenzymesModels, MolecularMolecular Sequence DataProtein Structure, QuaternaryProtein Structure, SecondaryProtein SubunitsSequence AlignmentThermus thermophilusVacuolar Proton-Translocating ATPasesBacterial ProteinsHoloenzymesProtein SubunitsVacuolar Proton-Translocating ATPases

Identifiers

PMID16281059
PMCPMC1283957

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.