Evidence map›Paper›PMID 16280085›Full record

ArticleBMC genomics2005

Genetic mapping of putative Chrna7 and Luzp2 neuronal transcriptional enhancers due to impact of a transgene-insertion and 6.8 Mb deletion in a mouse model of Prader-Willi and Angelman syndromes.

Mihaela Stefan, Kathryn C Claiborn, Edyta Stasiek, Jing-Hua Chai, Tohru Ohta, Richard Longnecker, John M Greally, Robert D Nicholls

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 18 citations in OpenAlex.

  1. Recommendations for the investigation of animal models of Prader-Willi syndrome.Mammalian genome : official journal of the International Mammalian Genome Society · 2013
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Mihaela StefanCenter for Neurobiology and Behavior, Department of Psychiatry, University of Pennsylvania, Philadelphia, PA 19104, USA. Mihaela.Stefan@chp.edu
Kathryn C Claiborn
Edyta Stasiek
Jing-Hua Chai
Tohru Ohta
Richard Longnecker
John M Greally
Robert D Nicholls
University of Pennsylvania · USChildren's Hospital of Pittsburgh · USAlbert Einstein College of Medicine · USNorthwestern University · USThe Bronx Defenders · US

Funding

In Vivo Model of Epstein-Barr Virus LatencyR01CA073507 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LONGNECKER, RICHARD M · 1997 to 2018
$6.1M
EBV LATENT MEMBRANE PROTEIN 2R01CA062234 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LONGNECKER, RICHARD M · 1994 to 2007
$2.2M
Functional Studies of gp42 and HLA Class 11 in EBVR01CA093444 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LONGNECKER, RICHARD M · 2002 to 2006
$1.8M
Genetic and Environmental Factors in Deletion DisordersR01ES010631 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI NICHOLLS, ROBERT D · 2001 to 2005
$1.5M
MOLECULAR STUDIES OF GENOMIC IMPRINTING IN HUMANSR01HD031491 · NICHD · UNIVERSITY OF PENNSYLVANIA · PI NICHOLLS, ROBERT D · 1994 to 2003
$1.3M
THE ROLE OF EPSTEIN-BARR VIRUS EBNA1, LMP1 AND LMP2A PROR01DE013127 · NIDCR · NORTHWESTERN UNIVERSITY · PI LONGNECKER, RICHARD M · 1999 to 2003
$1.0M
NCI NIH HHS CA62234NCI NIH HHS CA73507NCI NIH HHS CA93444NCI NIH HHS R01 CA062234NCI NIH HHS R01 CA073507NCI NIH HHS R01 CA093444NICHD NIH HHS HD31491NICHD NIH HHS R01 HD031491NIDCR NIH HHS DE13127NIDCR NIH HHS R01 DE013127NIEHS NIH HHS ES10631NIEHS NIH HHS R01 ES010631
6 · The paper itself

Abstract

backgroundPrader-Willi and Angelman syndrome (PWS and AS) patients typically have an approximately 5 Mb deletion of human chromosome 15q11-q13, of opposite parental origin. A mouse model of PWS and AS has a transgenic insertion-deletion (TgPWS/TgAS) of chromosome 7B/C subsequent to paternal or maternal inheritance, respectively. In this study, we define the deletion endpoints and examine the impact on expression of flanking genes.

resultsUsing molecular and cytological methods we demonstrate that 13 imprinted and 11 non-imprinted genes are included in the TgPWS/TgAS deletion. Normal expression levels were found in TgPWS brain for genes extending 9.1- or 5.6-Mb centromeric or telomeric of the deletion, respectively. Our molecular cytological studies map the proximal deletion breakpoint between the Luzp2 and Siglec-H loci, and we show that overall mRNA levels of Luzp2 in TgPWS and TgAS brain are significantly reduced by 17%. Intriguingly, 5' Chrna7 shows 1.7-fold decreased levels in TgPWS and TgAS brain whereas there is a > or =15-fold increase in expression in neonatal liver and spleen of these mouse models. By isolating a Chrna7-Tg fusion transcript from TgAS mice, we mapped the telomeric deletion breakpoint in Chrna7 intron 4.

conclusionBased on the extent of the deletion, TgPWS/TgAS mice are models for PWS/AS class I deletions. Other than for the first gene promoters immediately outside the deletion, since genes extending 5.6-9.1 Mb away from each end of the deletion show normal expression levels in TgPWS brain, this indicates that the transgene array does not induce silencing and there are no additional linked rearrangements. Using gene expression, non-coding conserved sequence (NCCS) and synteny data, we have genetically mapped a putative Luzp2 neuronal enhancer responsible for approximately 33% of allelic transcriptional activity. The Chrna7 results are explained by hypothesizing loss of an essential neuronal transcriptional enhancer required for approximately 80% of allelic Chrna7 promoter activity, while the Chrna7 promoter is upregulated in B lymphocytes by the transgene immunoglobulin enhancer. The mapping of a putative Chrna7 neuronal enhancer inside the deletion has significant implications for understanding the transcriptional regulation of this schizophrenia-susceptibility candidate gene.

Indexed as

Enhancer Elements, GeneticGene DeletionTransgenesAllelesalpha7 Nicotinic Acetylcholine ReceptorAngelman SyndromeAnimalsBrainCentromereChromosome MappingDisease Models, AnimalDNA-Binding ProteinsGene Expression RegulationGene SilencingGenomic ImprintingImmunoglobulinsalpha7 Nicotinic Acetylcholine ReceptorChrna7 protein, humanChrna7 protein, mouseDNA-Binding ProteinsImmunoglobulinsLuzp2 protein, mouseReceptors, Nicotinic

Identifiers

PMID16280085
PMCPMC1322230
OpenAlexW2126065717

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.