ArticleBMC bioinformatics2005
MiMiR: a comprehensive solution for storage, annotation and exchange of microarray data.
Article in BMC bioinformatics, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
11 citing papers in PubMed.
- Data standards for Omics data: the basis of data sharing and reuse.Methods in molecular biology (Clifton, N.J.) · 2011Review
- Exploring the use of internal and externalcontrols for assessing microarray technical performance.BMC research notes · 2010Article
- Organization of Biomedical Data for Collaborative Scientific Research: A Research Information Management System.International journal of information management · 2010Article
- Towards large-scale sample annotation in gene expression repositories.BMC bioinformatics · 2009Article
- GOAPhAR: An Integrative Discovery Tool for Annotation, Pathway Analysis.The open bioinformatics journal · 2009Article
- EMAAS: an extensible grid-based rich internet application for microarray data analysis and management.BMC bioinformatics · 2008Article
- MiMiR--an integrated platform for microarray data sharing, mining and analysis.BMC bioinformatics · 2008Article
- PASSIM--an open source software system for managing information in biomedical studies.BMC bioinformatics · 2007Article
- A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.BMC bioinformatics · 2006Article
- MicroArray Facility: a laboratory information management system with extended support for Nylon based technologies.BMC genomics · 2006Article
- MIMAS: an innovative tool for network-based high density oligonucleotide microarray data management and annotation.BMC bioinformatics · 2006Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
10 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe generation of large amounts of microarray data presents challenges for data collection, annotation, exchange and analysis. Although there are now widely accepted formats, minimum standards for data content and ontologies for microarray data, only a few groups are using them together to build and populate large-scale databases. Structured environments for data management are crucial for making full use of these data. DESCRIPTION: The MiMiR database provides a comprehensive infrastructure for microarray data annotation, storage and exchange and is based on the MAGE format. MiMiR is MIAME-supportive, customised for use with data generated on the Affymetrix platform and includes a tool for data annotation using ontologies. Detailed information on the experiment, methods, reagents and signal intensity data can be captured in a systematic format. Reports screens permit the user to query the database, to view annotation on individual experiments and provide summary statistics. MiMiR has tools for automatic upload of the data from the microarray scanner and export to databases using MAGE-ML.
conclusionMiMiR facilitates microarray data management, annotation and exchange, in line with international guidelines. The database is valuable for underpinning research activities and promotes a systematic approach to data handling. Copies of MiMiR are freely available to academic groups under licence.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.