Evidence map›Paper›PMID 16272511›Full record

ArticleJournal of clinical microbiology2005

Molecular epidemiology of clinical Cryptococcus neoformans strains from India.

N Jain, B L Wickes, S M Keller, J Fu, A Casadevall, P Jain, M A Ragan, U Banerjee, B C Fries

Open access · greenAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 92 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Ecoepidemiology of Cryptococcus gattii in Developing Countries.Journal of fungi (Basel, Switzerland) · 2017
    Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Meningitis Due to Cryptococcus gattii in an Immunocompetent Patient.Journal of clinical and diagnostic research : JCDR · 2013
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

N JainDepartment of Microbiology, All India Institute of Medical Sciences, New Delhi, India.
B L Wickes
S M Keller
J Fu
A Casadevall
P Jain
M A Ragan
U Banerjee
B C Fries
The University of Texas at San Antonio · USAll India Institute of Medical Sciences · INYeshiva University · USIndian Institute of Science Bangalore · INUniversity of Queensland · AU

Funding

Synergy of Host Defense Mechanisms in the LungR01HL059842 · NHLBI · YESHIVA UNIVERSITY · PI CASADEVALL, ARTURO · 1997 to 2023
$7.4M
PROTECTIVE ANTIBODIES FOR CRYPTOCOCCAL INFECTIONSR01AI033774 · NIAID · YESHIVA UNIVERSITY · PI CASADEVALL, ARTURO · 1994 to 2014
$5.6M
INTERNATIONAL TRAINING IN AIDS/TB PREVENTION RESEARCHD43TW001403 · FIC · YESHIVA UNIVERSITY · PI PRASAD, VINAYAKA R. · 2000 to 2011
$3.8M
response to phenotypic switch variants to C. neoformansR01AI059681 · NIAID · STATE UNIVERSITY NEW YORK STONY BROOK · PI FRIES, BETTINA · 2004 to 2014
$3.6M
Congenic strains of serotype A Cryptococcus neoformansR01AI054946 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI WICKES, BRIAN · 2003 to 2005
$438k
FIC NIH HHS D43 TW001403FIC NIH HHS D43-TW01403NHLBI NIH HHS HL59842NHLBI NIH HHS R01 HL059842NIAID NIH HHS AI3342NIAID NIH HHS R01 AI033774NIAID NIH HHS R01 AI054946NIAID NIH HHS R01-AI054946NIAID NIH HHS R01 AI059681NIAID NIH HHS R01-AI33774NIAID NIH HHS R01-AI59681
6 · The paper itself

Abstract

Little is known about the molecular epidemiology of the human pathogenic fungus Cryptococcus neoformans in India, a country now in the midst of an epidemic of AIDS-related cryptococcosis. We studied 57 clinical isolates from several regions in India, of which 51 were C. neoformans var. grubii, 1 was C. neoformans var. neoformans, and 5 were C. neoformans var. gattii. This strain set included 18 additional sequential isolates from 14 patients. Strains were characterized phenotypically by measuring the polysaccharide capsule and by determining the MICs of standard antifungals. Molecular typing was performed by a PCR-based method using the minisatellite-specific core sequence (M13), by electrophoretic karyotyping, by restriction fragment length polymorphisms with the C. neoformans transposon 1 (TCN-1), and by URA5 DNA sequence analysis. Overall, Indian isolates were less heterogeneous than isolates from other regions and included a subset that clustered into one group based on URA5 DNA sequence analysis. In summary, our results demonstrate (i) differences in genetic diversity of C. neoformans isolates from India compared to isolates from other regions in the world; (ii) that DNA typing with the TCN-1 probe can adequately distinguish C. neoformans var. grubii strains; (iii) that TCN-1 sequences are absent in many C. neoformans var. gattii strains, supporting previous studies indicating that these strains have a limited geographical dispersal; and (iv) that human cryptococcal infection can be associated with microevolution of the infecting strain and by simultaneous coinfection with two distinct C. neoformans strains.

Indexed as

AdolescentAdultChildCryptococcosisCryptococcus neoformansDNA, FungalDNA Transposable ElementsGenes, FungalHumansIndiaKaryotypingMiddle AgedMinisatellite RepeatsMolecular EpidemiologyPolymerase Chain ReactionPolymorphism, Restriction Fragment LengthDNA, FungalDNA Transposable Elements

Identifiers

PMID16272511
PMCPMC1287776
OpenAlexW2145180070

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.