Evidence map›Paper›PMID 16272447›Full record

ArticleBiophysical journal2006

Cholesterol depletion induces solid-like regions in the plasma membrane.

Stefanie Y Nishimura, Marija Vrljic, Lawrence O Klein, Harden M McConnell, W E Moerner

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 104 citations in OpenAlex.

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  6. Motional dynamics of single Patched1 molecules in cilia are controlled by Hedgehog and cholesterol.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
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  9. n-Alcohol Length Governs Shift in LBiophysical journal · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Stefanie Y NishimuraDepartment of Chemistry, Molecular and Cellular Physiology, and Biophysics Program, Stanford University, Stanford, California 94305-5080, USA. snishimu@stanford.edu
Marija Vrljic
Lawrence O Klein
Harden M McConnell
W E Moerner
Stanford University · US

Funding

Single-Molecule Fluorophores for Cellular Imaging(RMI)P20HG003638 · NHGRI · STANFORD UNIVERSITY · PI MOERNER, WILLIAM E · 2004 to 2008
$3.0M
NHGRI NIH HHS 1 P20 HG003638-01NHGRI NIH HHS P20 HG003638
6 · The paper itself

Abstract

Glycosylphosphatidylinositol-linked and transmembrane major histocompatibility complex (MHC) class II I-E(k) proteins, as well as N-(6-tetramethylrhodaminethiocarbamoyl)-1,2-dihexadecanoyl-sn-glycero-3-phosphoethanolamine (Tritc-DHPE), are used as probes to determine the effect of cholesterol concentration on the organization of the plasma membrane at temperatures in the range 22 degrees C-42 degrees C. Cholesterol depletion caused a decrease in the diffusion coefficients for the MHC II proteins and also for a slow fraction of the Tritc-DHPE population. At 37 degrees C, reduction of the total cell cholesterol concentration results in a smaller suppression of the translational diffusion for I-E(k) proteins (twofold) than was observed in earlier work at 22 degrees C (five sevenfold) Vrljic, M., S. Y. Nishimura, W. E. Moerner, and H. M. McConnell. 2005. Biophys. J. 88:334-347. At 37 degrees C, the diffusion of both I-E(k) proteins is Brownian (0.9 < alpha-parameter < 1.1). More than 99% of the protein population diffuses homogeneously when imaged at 65 frames per s. As the temperature is raised from 22 degrees C to 42 degrees C, a change in activation energy is seen at approximately 35 degrees C in the Arrhenius plots. Cytoskeletal effects appear to be minimal. These results are consistent with a previously described model of solid-like domain formation in the plasma membrane.

Indexed as

AnimalsCell MembraneCHO CellsCholesterolCricetinaeCytoskeletonDiffusionGlycosylphosphatidylinositolsHistocompatibility Antigens Class IIImage Processing, Computer-AssistedLipidsMiceNocodazoleProteinsTemperatureTime FactorsCholesterolGlycosylphosphatidylinositolsHistocompatibility Antigens Class IILipidsNocodazoleProteins

Identifiers

PMID16272447
PMCPMC1367117
OpenAlexW1966809419

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.