Evidence map›Paper›PMID 16272438›Full record

ArticleBiophysical journal2006

Catch-bond model derived from allostery explains force-activated bacterial adhesion.

Wendy Thomas, Manu Forero, Olga Yakovenko, Lina Nilsson, Paolo Vicini, Evgeni Sokurenko, Viola Vogel

Abstract read
In one paragraph

Article in Biophysical journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 98 papers.

0numbers the graph read from it
0cells of the map it votes in
98citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

98 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. A direct computational assessment of vinculin-actin unbinding kinetics reveals catch-bonding behavior.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. De novo DNA-based catch bonds.Nature chemistry · 2024
    Article
  6. Engineering tunable catch bonds with DNA.Nature communications · 2024
    Article
  7. Review
  8. Article
  9. Article
  10. Topology of molecular deformations induces triphasic catch bonding in selectin-ligand bonds.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
  12. Article
  13. Review
  14. The Energetic Landscape of Catch Bonds in TCR Interfaces.Journal of immunology (Baltimore, Md. : 1950) · 2023
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

38 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Wendy ThomasDepartment of Bioengineering, University of Washington, Seattle, Washington, USA. wendyt@u.washington.edu
Manu Forero
Olga Yakovenko
Lina Nilsson
Paolo Vicini
Evgeni Sokurenko
Viola Vogel

Funding

Resource Facility for Population KineticsP41EB001975 · NIBIB · UNIVERSITY OF WASHINGTON · PI FOSTER, DAVID M · 2003 to 2007
$4.9M
Dynamic Properties of Bacterial AdhesionsR01AI050940 · NIAID · UNIVERSITY OF WASHINGTON · PI SOKURENKO, EVGENI VENIAMINOVIC · 2002 to 2011
$4.7M
NIAID NIH HHS R01 AI050940NIAID NIH HHS R01 AI50940NIBIB NIH HHS P41 EB-001975NIBIB NIH HHS P41 EB001975
6 · The paper itself

Abstract

High shear enhances the adhesion of Escherichia coli bacteria binding to mannose coated surfaces via the adhesin FimH, raising the question as to whether FimH forms catch bonds that are stronger under tensile mechanical force. Here, we study the length of time that E. coli pause on mannosylated surfaces and report a double exponential decay in the duration of the pauses. This double exponential decay is unlike previous single molecule or whole cell data for other catch bonds, and indicates the existence of two distinct conformational states. We present a mathematical model, derived from the common notion of chemical allostery, which describes the lifetime of a catch bond in which mechanical force regulates the transitions between two conformational states that have different unbinding rates. The model explains these characteristics of the data: a double exponential decay, an increase in both the likelihood and lifetime of the high-binding state with shear stress, and a biphasic effect of force on detachment rates. The model parameters estimated from the data are consistent with the force-induced structural changes shown earlier in FimH. This strongly suggests that FimH forms allosteric catch bonds. The model advances our understanding of both catch bonds and the role of allostery in regulating protein activity.

Indexed as

Bacterial AdhesionAdhesins, Escherichia coliAllosteric SiteBiophysicsEscherichia coliFimbriae, BacterialFimbriae ProteinsLigandsMannoseMicroscopy, VideoModels, BiologicalModels, StatisticalModels, TheoreticalProtein BindingProtein ConformationStress, MechanicalAdhesins, Escherichia coliFimbriae ProteinsfimH protein, E coliLigandsMannose

Identifiers

PMID16272438
PMCPMC1367101

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.