Evidence map›Paper›PMID 16271890›Full record

ArticleStructure (London, England : 1993)2005

Structural basis of severe acute respiratory syndrome coronavirus ADP-ribose-1''-phosphate dephosphorylation by a conserved domain of nsP3.

Kumar Singh Saikatendu, Jeremiah S Joseph, Vanitha Subramanian, Tom Clayton, Mark Griffith, Kin Moy, Jeffrey Velasquez, Benjamin W Neuman, Michael J Buchmeier, Raymond C Stevens and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 143 papers.

0numbers the graph read from it
0cells of the map it votes in
143citing papers in PubMed
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

143 citing papers in PubMed, 218 citations in OpenAlex.

  1. Article
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  5. Mutation of a highly conserved isoleucine residue in loop 2 of severalbioRxiv : the preprint server for biology · 2024
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  9. Article
  10. Article
  11. PARP14 is a writer, reader, and eraser of mono-ADP-ribosylation.The Journal of biological chemistry · 2023
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. NADTrends in immunology · 2022
    Review
  20. Review

83 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Kumar Singh SaikatenduDepartment of Cell Biology, The Scripps Research Institute, La Jolla, California 92037, USA.
Jeremiah S Joseph
Vanitha Subramanian
Tom Clayton
Mark Griffith
Kin Moy
Jeffrey Velasquez
Benjamin W Neuman
Michael J Buchmeier
Raymond C Stevens
Peter Kuhn
Scripps Research Institute · US

Funding

AHRQ HHS HHSN 266200400058CNCI NIH HHS Y1-CO-1020NIGMS NIH HHS Y1-GM-1104
6 · The paper itself

Abstract

The crystal structure of a conserved domain of nonstructural protein 3 (nsP3) from severe acute respiratory syndrome coronavirus (SARS-CoV) has been solved by single-wavelength anomalous dispersion to 1.4 A resolution. The structure of this "X" domain, seen in many single-stranded RNA viruses, reveals a three-layered alpha/beta/alpha core with a macro-H2A-like fold. The putative active site is a solvent-exposed cleft that is conserved in its three structural homologs, yeast Ymx7, Archeoglobus fulgidus AF1521, and Er58 from E. coli. Its sequence is similar to yeast YBR022W (also known as Poa1P), a known phosphatase that acts on ADP-ribose-1''-phosphate (Appr-1''-p). The SARS nsP3 domain readily removes the 1'' phosphate group from Appr-1''-p in in vitro assays, confirming its phosphatase activity. Sequence and structure comparison of all known macro-H2A domains combined with available functional data suggests that proteins of this superfamily form an emerging group of nucleotide phosphatases that dephosphorylate Appr-1''-p.

Indexed as

Adenosine Diphosphate RiboseAmino Acid SequenceConserved SequenceMolecular Sequence DataPhosphorylationProtein Structure, TertiaryRNA-Dependent RNA PolymeraseSequence Analysis, ProteinSevere acute respiratory syndrome-related coronavirusStructure-Activity RelationshipViral Nonstructural ProteinsAdenosine Diphosphate RiboseADP-ribose 1''-phosphateNsp3 protein, SARS-CoVRNA-Dependent RNA PolymeraseViral Nonstructural Proteins

Identifiers

PMID16271890
PMCPMC7126892
OpenAlexW2019184993

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.