Evidence map›Paper›PMID 16269755›Full record

ArticleApplied and environmental microbiology2005

Algal species and light microenvironment in a low-pH, geothermal microbial mat community.

M J Ferris, K B Sheehan, M Kühl, K Cooksey, B Wigglesworth-Cooksey, R Harvey, J M Henson

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.4field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Acidophilic green algal genome provides insights into adaptation to an acidic environment.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  8. Conserved structure of Snu13 from the highly reduced spliceosome of Cyanidioschyzon merolae.Protein science : a publication of the Protein Society · 2016
    Article
  9. Eukaryotic diversity at pH extremes.Frontiers in microbiology · 2012
    Article
  10. Article
  11. Article
  12. The evolution of photosynthesis...again?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2008
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

M J FerrisMicrobiology Department and Thermal Biology Institute, Montana State University, Bozeman 59717, USA. mferris@chnola-research.org
K B Sheehan
M Kühl
K Cooksey
B Wigglesworth-Cooksey
R Harvey
J M Henson
Montana State University · USLouisiana State University Health Sciences Center New Orleans · USUniversity of Copenhagen · DKUniversity of New Orleans · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Unicellular algae are the predominant microbial mat-forming phototrophs in the extreme environments of acidic geothermal springs. The ecology of these algae is not well known because concepts of species composition are inferred from cultivated isolates and microscopic observations, methods known to provide incomplete and inaccurate assessments of species in situ. We used sequence analysis of 18S rRNA genes PCR amplified from mat samples from different seasons and different temperatures along a thermal gradient to identify algae in an often-studied acidic (pH 2.7) geothermal creek in Yellowstone National Park. Fiber-optic microprobes were used to show that light for algal photosynthesis is attenuated to < 1% over the 1-mm surface interval of the mat. Three algal sequences were detected, and each was present year-round. A Cyanidioschyzon merolae sequence was predominant at temperatures of > or = 49 degrees C. A Chlorella protothecoides var. acidicola sequence and a Paradoxia multisita-like sequence were predominant at temperatures of < or = 39 degrees C.

Indexed as

EcosystemHot TemperatureLightChlorellaHydrogen-Ion ConcentrationMolecular Sequence DataPhotosynthesisPhylogenyPolymerase Chain ReactionRhodophytaRiversRNA, Ribosomal, 18SSeasonsSequence Analysis, DNATemperatureRNA, Ribosomal, 18S

Identifiers

PMID16269755
PMCPMC1287733
OpenAlexW2113173726

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.