Evidence map›Paper›PMID 16267301›Full record

ArticleJournal of bacteriology2005

A gyrase mutant with low activity disrupts supercoiling at the replication terminus.

Zhenhua Pang, Ray Chen, Dipankar Manna, N Patrick Higgins

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.1field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Supercoil Levels inMicroorganisms · 2019
    Article
  3. Article
  4. Topological Behavior of Plasmid DNA.Microbiology spectrum · 2015
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Zhenhua PangDepartment of Biochemistry and Molecular Genetics, University of Alabama at Birmingham, 35294, USA.
Ray Chen
Dipankar Manna
N Patrick Higgins
University of Alabama at Birmingham · US

Funding

LONG RANGE INTERACTIONS IN MU AND BACTERIAL DNAR01GM033143 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI HIGGINS, NORMAN P. · 1985 to 2011
$2.9M
NIGMS NIH HHS GM-33143-20NIGMS NIH HHS R01 GM033143
6 · The paper itself

Abstract

When a mutation in an essential gene shows a temperature-sensitive phenotype, one usually assumes that the protein is inactive at nonpermissive temperature. DNA gyrase is an essential bacterial enzyme composed of two subunits, GyrA and GyrB. The gyrB652 mutation results from a single base change that substitutes a serine residue for arginine 436 (R436-S) in the GyrB protein. At 42 degrees C, strains with the gyrB652 allele stop DNA replication, and at 37 degrees C, such strains grow but have RecA-dependent SOS induction and show constitutive RecBCD-dependent DNA degradation. Surprisingly, the GyrB652 protein is not inactive at 42 degrees C in vivo or in vitro and it doesn't directly produce breaks in chromosomal DNA. Rather, this mutant has a low k(cat) compared to wild-type GyrB subunit. With more than twice the normal mean number of supercoil domains, this gyrase hypomorph is prone to fork collapse and topological chaos near the terminus of DNA replication.

Indexed as

Genes, EssentialAmino Acid SubstitutionDNA GyraseDNA ReplicationDNA, SuperhelicalMutation, MissenseSalmonella typhimuriumTemperatureDNA GyraseDNA, Superhelical

Identifiers

PMID16267301
PMCPMC1280326
OpenAlexW2068121693

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.