Evidence map›Paper›PMID 16267293›Full record

ArticleJournal of bacteriology2005

Diverse phenotypes resulting from polyphosphate kinase gene (ppk1) inactivation in different strains of Helicobacter pylori.

Shumin Tan, Cresson D Fraley, Maojun Zhang, Daiva Dailidiene, Arthur Kornberg, Douglas E Berg

Abstract read
In one paragraph

Article in Journal of bacteriology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Isolation and characterization of a potential heterotrophic nitrifying-aerobic denitrifying and phosphorus-accumulating bacteriumWater science and technology : a journal of the International Association on Water Pollution Research · 2026
    Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Inorganic polyphosphate in mammals: where's Wally?Biochemical Society transactions · 2020
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. ppGpp conjures bacterial virulence.Microbiology and molecular biology reviews : MMBR · 2010
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Shumin TanDepartment of Molecular Microbiology, Washington University Medical School, St. Louis, MO 63110, USA.
Cresson D Fraley
Maojun Zhang
Daiva Dailidiene
Arthur Kornberg
Douglas E Berg

Funding

Washington University DDRCC Supplemental Equipment RequestP30DK052574 · NIDDK · WASHINGTON UNIVERSITY · PI Nicholas O. Davidson · 2000 to 2026
$30.8M
H.PYLORI POPULATION GENETICS AND GENOME EVOLUTIONR01DK063041 · NIDDK · WASHINGTON UNIVERSITY · PI BERG, DOUGLAS EUGENE · 2003 to 2007
$1.6M
GENETICS OF POLYPHOSPHATE METABOLISM IN H. PYLORIR03AI057826 · NIAID · WASHINGTON UNIVERSITY · PI BERG, DOUGLAS EUGENE · 2004 to 2005
$153k
Intrinsic and extrinsic control of B cells toleranceR01AI058166 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI MONROE, JOHN G · 2004 to 2004
$32k
NIAID NIH HHS R01 AI58166NIAID NIH HHS R03 AI057826NIAID NIH HHS R03 AI57826NIDDK NIH HHS P30 DK052574NIDDK NIH HHS R01 DK063041NIDDK NIH HHS R01 DK63041NIDDK NIH HHS R03 DK52574NIGMS NIH HHS R01 GM007841
6 · The paper itself

Abstract

Connections among biochemical pathways should help buffer organisms against environmental stress and affect the pace and trajectory of genome evolution. To explore these ideas, we studied consequences of inactivating the gene for polyphosphate kinase 1 (ppk1) in strains of Helicobacter pylori, a genetically diverse gastric pathogen. The PPK1 enzyme catalyzes synthesis of inorganic polyphosphate (poly P), a reservoir of high-energy phosphate bonds with multiple roles. Prior analyses in less-fastidious microbes had implicated poly P in stress resistance, motility, and virulence. In our studies, ppk1 inactivation caused the expected near-complete absence of poly P (>250-fold decrease) but had phenotypic effects that differed markedly among unrelated strains: (i) poor initial growth on standard brain heart infusion agar (five of six strains tested); (ii) weakened colonization of mice (4 of 5 strains); (iii) reduced growth on Ham's F-12 agar, a nutritionally limiting medium (8 of 11 strains); (iv) heightened susceptibility to metronidazole (6 of 17 strains); and (v) decreased motility in soft agar (1 of 13 strains). Complementation tests confirmed that the lack of growth of one Deltappk1 strain on F-12 agar and the inability to colonize mice of another were each due to ppk1 inactivation. Thus, the importance of ppk1 to H. pylori differed among strains and the phenotypes monitored. We suggest that quantitative interactions, as seen here, are common among genes that affect metabolic pathways and that H. pylori's high genetic diversity makes it well suited for studies of such interactions, their underlying mechanisms, and their evolutionary consequences.

Indexed as

Gene DeletionAnimalsAnti-Infective AgentsDisease Models, AnimalGenetic Complementation TestHelicobacter InfectionsHelicobacter pyloriLocomotionMetronidazoleMiceMicrobial Sensitivity TestsMutagenesis, InsertionalPhosphotransferases (Phosphate Group Acceptor)PolyphosphatesSequence DeletionVirulenceAnti-Infective AgentsMetronidazolePhosphotransferases (Phosphate Group Acceptor)polyphosphate kinasePolyphosphates

Identifiers

PMID16267293
PMCPMC1280296

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.