Evidence map›Paper›PMID 16267268›Full record

ArticleMolecular biology of the cell2006

Slx4 regulates DNA damage checkpoint-dependent phosphorylation of the BRCT domain protein Rtt107/Esc4.

Tania M Roberts, Michael S Kobor, Suzanne A Bastin-Shanower, Miki Ii, Sonja A Horte, Jennifer W Gin, Andrew Emili, Jasper Rine, Steven J Brill, Grant W Brown

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 79 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Tania M RobertsDepartment of Biochemistry, University of Toronto, Toronto, Ontario, Canada M5S 1A8.
Michael S Kobor
Suzanne A Bastin-Shanower
Miki Ii
Sonja A Horte
Jennifer W Gin
Andrew Emili
Jasper Rine
Steven J Brill
Grant W Brown
Rutgers, The State University of New Jersey · USUniversity of Toronto · CAUniversity of British Columbia · CAUniversity of California, Berkeley · US

Funding

GENETIC ANALYSIS OF THE GENES CONTROLLING A POSITIONR01GM031105 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RINE, JASPER D · 1985 to 2020
$6.4M
GENETIC ANALYSIS OF GENES CONTROLLING A POSITION EFFECTR37GM031105 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RINE, JASPER D · 1999 to 2008
$3.5M
Replication Protein A and the DNA Damage responseR01GM055583 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI BRILL, STEVEN J. · 1998 to 2006
$1.6M
Recombination-mediated DNA repair in yeastR01GM067956 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI BRILL, STEVEN J. · 2003 to 2006
$1.1M
NIGMS NIH HHS GM-055583NIGMS NIH HHS GM-067956NIGMS NIH HHS GM-31105NIGMS NIH HHS R01 GM031105NIGMS NIH HHS R01 GM055583NIGMS NIH HHS R01 GM067956NIGMS NIH HHS R37 GM031105
6 · The paper itself

Abstract

RTT107 (ESC4, YHR154W) encodes a BRCA1 C-terminal-domain protein that is important for recovery from DNA damage during S phase. Rtt107 is a substrate of the checkpoint protein kinase Mec1, although the mechanism by which Rtt107 is targeted by Mec1 after checkpoint activation is currently unclear. Slx4, a component of the Slx1-Slx4 structure-specific nuclease, formed a complex with Rtt107. Deletion of SLX4 conferred many of the same DNA-repair defects observed in rtt107delta, including DNA damage sensitivity, prolonged DNA damage checkpoint activation, and increased spontaneous DNA damage. These phenotypes were not shared by the Slx4 binding partner Slx1, suggesting that the functions of the Slx4 and Slx1 proteins in the DNA damage response were not identical. Of particular interest, Slx4, but not Slx1, was required for phosphorylation of Rtt107 by Mec1 in vivo, indicating that Slx4 was a mediator of DNA damage-dependent phosphorylation of the checkpoint effector Rtt107. We propose that Slx4 has roles in the DNA damage response that are distinct from the function of Slx1-Slx4 in maintaining rDNA structure and that Slx4-dependent phosphorylation of Rtt107 by Mec1 is critical for replication restart after alkylation damage.

Indexed as

DNA DamageCell CycleDNA, FungalDrug Resistance, FungalEndodeoxyribonucleasesIntracellular Signaling Peptides and ProteinsMethyl MethanesulfonateNuclear ProteinsPhosphorylationProtein BindingProtein Serine-Threonine KinasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsDNA, FungalEndodeoxyribonucleasesIntracellular Signaling Peptides and ProteinsMEC1 protein, S cerevisiaeMethyl MethanesulfonateNuclear ProteinsProtein Serine-Threonine KinasesRTT107 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSLX4 protein, S cerevisiae

Identifiers

PMID16267268
PMCPMC1345688
OpenAlexW2137400360

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.