Evidence map›Paper›PMID 16260616›Full record

ArticleMolecular and cellular biology2005

The basic domain of ATH5 mediates neuron-specific promoter activity during retina development.

Dorota Skowronska-Krawczyk, Lidia Matter-Sadzinski, Marc Ballivet, Jean-Marc Matter

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Biasing amacrine subtypes in the Atoh7 lineage through expression of Barhl2.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2012
    Article
  4. In vivo neuronal subtype-specific targets of Atoh1 (Math1) in dorsal spinal cord.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2011
    Article
  5. Article
  6. Context dependence of proneural bHLH proteins.Current opinion in genetics & development · 2008
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Dorota Skowronska-KrawczykUniversity of Lausanne, Eye Hospital Jules Gonin, Switzerland. Dorota.Skowronska@biochem.unige.ch
Lidia Matter-Sadzinski
Marc Ballivet
Jean-Marc Matter
University of Geneva · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the developing retina, the gene encoding the beta3 subunit of the neuronal nicotinic receptor, a specific marker of retinal ganglion cells, is under the direct control of the atonal homolog 5 (ATH5) basic helix-loop-helix (bHLH) transcription factor. Although quite short (143 bp in length), the beta3 promoter has the remarkable capacity to discriminate between ATH5 and the other neuronal bHLH proteins expressed in the developing nervous system. We have identified three amino acids within the basic domain that confer specificity to the ATH5 protein. These residues do not mediate direct DNA binding but are required for interaction between ATH5 and chromatin-associated proteins during retina development. When misexpressed in neurons, the myogenic bHLH factor MyoD is also able to activate the beta3 gene. This, however, is achieved not by binding of the protein to the promoter but by dimerization of MyoD with a partner, a process that depends not on the basic domain but on the HLH domain. By sequestering an E-box-binding protein, MyoD relieves the active repression that blocks the beta3 promoter in most neurons. The mechanisms used by bHLH proteins to activate beta3 thus highlight how ATH5 is selected by the beta3 promoter and coordinates the derepression and transcriptional activation of the beta3 gene during the specification of retinal ganglion cells.

Indexed as

Gene Expression Regulation, DevelopmentalPromoter Regions, GeneticAmino Acid MotifsAmino Acid SequenceAnimalsBase SequenceBasic Helix-Loop-Helix ProteinsBlotting, WesternCell NucleusChick EmbryoChickensChloramphenicol O-AcetyltransferaseChromatinChromatin ImmunoprecipitationDimerizationDNABasic Helix-Loop-Helix ProteinsChloramphenicol O-AcetyltransferaseChromatinDNADNA PrimersGlutathione TransferaseMyoD ProteinRNA, Messenger

Identifiers

PMID16260616
PMCPMC1280256
OpenAlexW2108430535

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.