Evidence map›Paper›PMID 16260613›Full record

ArticleMolecular and cellular biology2005

A nuclear surveillance pathway for mRNAs with defective polyadenylation.

Laura Milligan, Claire Torchet, Christine Allmang, Tracey Shipman, David Tollervey

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Controlling nuclear RNA levels.Nature reviews. Genetics · 2018
    Review
  7. Article
  8. Article
  9. Integration of mRNP formation and export.Cellular and molecular life sciences : CMLS · 2017
    Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. mRNA stability in the nucleus.Journal of Zhejiang University. Science. B · 2014
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Laura MilliganWellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3JR, United Kingdom.
Claire Torchet
Christine Allmang
Tracey Shipman
David Tollervey

Funding

Wellcome Trust
6 · The paper itself

Abstract

The pap1-5 mutation in poly(A) polymerase causes rapid depletion of mRNAs at restrictive temperatures. Residual mRNAs are polyadenylated, indicating that Pap1-5p retains at least partial activity. In pap1-5 strains lacking Rrp6p, a nucleus-specific component of the exosome complex of 3'-5' exonucleases, accumulation of poly(A)+ mRNA was largely restored and growth was improved. The catalytically inactive mutant Rrp6-1p did not increase growth of the pap1-5 strain and conferred much less mRNA stabilization than rrp6delta. This may indicate that the major function of Rrp6p is in RNA surveillance. Inactivation of core exosome components, Rrp41p and Mtr3p, or the nuclear RNA helicase Mtr4p gave different phenotypes, with accumulation of deadenylated and 3'-truncated mRNAs. We speculate that slowed mRNA polyadenylation in the pap1-5 strain is detected by a surveillance activity of Rrp6p, triggering rapid deadenylation and exosome-mediated degradation. In wild-type strains, assembly of the cleavage and polyadenylation complex might be suboptimal at cryptic polyadenylation sites, causing slowed polyadenylation.

Indexed as

Gene Expression Regulation, FungalCatalysisCell NucleusDEAD-box RNA HelicasesExonucleasesExoribonucleasesExosome Multienzyme Ribonuclease ComplexGlucoseKluyveromycesModels, BiologicalModels, GeneticMutationNuclear ProteinsPancreatitis-Associated ProteinsPhenotypePoly ADEAD-box RNA HelicasesExonucleasesExoribonucleasesExosome Multienzyme Ribonuclease ComplexGlucoseMTR3 protein, S cerevisiaeMTR4 protein, S cerevisiaeNuclear ProteinsPancreatitis-Associated ProteinsPoly APolynucleotide AdenylyltransferaseREG3A protein, humanRNARNA HelicasesRNA, MessengerRRP6 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSKI6 protein, S cerevisiae

Identifiers

PMID16260613
PMCPMC1280253

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.