Evidence map›Paper›PMID 16258010›Full record

ArticlePlant physiology2005

An egg apparatus-specific enhancer of Arabidopsis, identified by enhancer detection.

Wei Yang, Richard A Jefferson, Eric Huttner, James M Moore, Wendy B Gagliano, Ueli Grossniklaus

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Novel mRNAs 3' end-associatedRNA (New York, N.Y.) · 2019
    Article
  5. Global Quantitative Mapping of Enhancers in Rice by STARR-seq.Genomics, proteomics & bioinformatics · 2019
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. When Double is not Twice as Much.Frontiers in plant science · 2011
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Wei YangCAMBIA, Canberra, Australian Capital Territory 2601, Australia.
Richard A Jefferson
Eric Huttner
James M Moore
Wendy B Gagliano
Ueli Grossniklaus
University of Zurich · CHCold Spring Harbor Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite a central role in angiosperm reproduction, few gametophyte-specific genes and promoters have been isolated, particularly for the inaccessible female gametophyte (embryo sac). Using the Ds-based enhancer-detector line ET253, we have cloned an egg apparatus-specific enhancer (EASE) from Arabidopsis (Arabidopsis thaliana). The genomic region flanking the Ds insertion site was further analyzed by examining its capability to control gusA and GFP reporter gene expression in the embryo sac in a transgenic context. Through analysis of a 5' and 3' deletion series in transgenic Arabidopsis, the sequence responsible for egg apparatus-specific expression was delineated to 77 bp. Our data showed that this enhancer is unique in the Arabidopsis genome, is conserved among different accessions, and shows an unusual pattern of sequence variation. This EASE works independently of position and orientation in Arabidopsis but is probably not associated with any nearby gene, suggesting either that it acts over a large distance or that a cryptic element was detected. Embryo-specific ablation in Arabidopsis was achieved by transactivation of a diphtheria toxin gene under the control of the EASE. The potential application of the EASE element and similar control elements as part of an open-source biotechnology toolkit for apomixis is discussed.

Indexed as

Gene Expression Regulation, PlantArabidopsisBase SequenceDiphtheria ToxinEnhancer Elements, GeneticFlowersGene Expression Regulation, DevelopmentalGenes, PlantGenes, ReporterMolecular Sequence DataMutationOrgan SpecificityOvumPeptide FragmentsPeroxidaseRNA, MessengerDiphtheria Toxindiphtheria toxin fragment APeptide FragmentsPeroxidaseRNA, Messenger

Identifiers

PMID16258010
PMCPMC1283777
OpenAlexW2154043676

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.