Evidence map›Paper›PMID 16254552›Full record

ArticleMolecular vision2005

The interphotoreceptor retinoid-binding protein (IRBP) of the chicken (Gallus gallus domesticus).

Deborah L Stenkamp, John L Calderwood, Ellen E Van Niel, Lawrence M Daniels, Federico Gonzalez-Fernandez

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In one paragraph

Article in Molecular vision, 2005. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Deborah L StenkampDepartment of Biological Sciences, University of Idaho, Moscow, ID 83844-3051, USA. dstenkam@uidaho.edu
John L Calderwood
Ellen E Van Niel
Lawrence M Daniels
Federico Gonzalez-Fernandez
University of Idaho · US

Funding

Patterning Genes in Retinal DevelopmentR01EY012146 · NEI · UNIVERSITY OF IDAHO · PI Deborah L Stenkamp · 2004 to 2026
$6.7M
IRBP--STRUCTURE/FUNCTIONR01EY009412 · NEI · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI GHOSH, DEBASHIS, GONZALEZ-FERNANDEZ, FEDERICO · 1999 to 2011
$3.0M
PATTERNING GENES IN RETINAL DEVELOPMENTR29EY012146 · NEI · UNIVERSITY OF IDAHO · PI STENKAMP, DEBORAH L · 1998 to 2002
$299k
IRBP--STRUCTURE AND FUNCTIONR29EY009412 · NEI · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI GONZALEZ-FERNANDEZ, FEDERICO · 1993 to 1997
–
NEI NIH HHS EY012146NEI NIH HHS EY09412NEI NIH HHS R01 EY009412NEI NIH HHS R01 EY012146NEI NIH HHS R29 EY012146
6 · The paper itself

Abstract

purposeDespite decades of investigation, the function of interphotoreceptor retinoid binding protein (IRBP), the most abundant protein in the interphotoreceptor matrix of vertebrates, remains enigmatic. Roles for IRBP in the visual cycle of rod photoreceptors and in the independent visual cycle of cone photoreceptors have been suggested, yet very little is known of the biology of IRBP in cone-dominant retinas, such as those of diurnal birds. Our aim was to identify and characterize expression of the IRBP of the cone-dominant chicken (Gallus gallus domesticus).

methodsChicken IRBP mRNA was identified by PCR cloning. Primary protein structure, genomic organization, and phylogenies were determined through comparative sequence analyses. Expression of IRBP mRNA was characterized by northern analysis and by in situ hybridization on cryosectioned chicken retina. Expression of the IRBP protein was characterized by western blotting and by indirect immunofluorescence on cryosectioned retina and on retinal whole mounts.

resultsThe chicken IRBP gene encodes a secreted protein with a predicted 1,252 amino acid length. The gene structure for chicken IRBP resembles that of most other vertebrates, with four homologous, modular repeats and introns within only the fourth module. Each module is more homologous with the corresponding module in other species than it is with the remaining chicken modules. Chicken retinal tissue contains a single IRBP mRNA transcript of approximately 4.8 kb and western analysis of chicken retina shows a single major band of 140 kDa. Chicken IRBP mRNA is expressed exclusively by retinal photoreceptor cells and the intensity of the hybridization signal shows light/dark rhythmicity. The IRBP protein is localized to the interphotoreceptor matrix of the chicken retina and to intracellular regions of photoreceptors, with a spatial distribution indicating an association with cone outer segments.

conclusionsThe high degree of conservation of IRBP's primary structure, genomic organization, and cell-specific expression within the retinas of all vertebrates examined to date, including those with cone-dominant retinas, implies a conserved role for IRBP in photoreceptor function and/or health. Expression of chicken IRBP and its mRNA are functionally regulated. This report provides a necessary first step to explore a specific function for IRBP in the cone visual cycle.

Indexed as

Gene ExpressionAmino Acid SequenceAnimalsBase SequenceBlotting, NorthernBlotting, WesternChickensCloning, MolecularExtracellular MatrixEye ProteinsFluorescent Antibody Technique, IndirectIn Situ HybridizationMolecular Sequence DataPolymerase Chain ReactionRetinaRetinal Cone Photoreceptor CellsEye ProteinsRetinol-Binding ProteinsRetinol-Binding Proteins, InterstitialRNA, Messenger

Identifiers

PMID16254552
PMCPMC2895308
OpenAlexW2183429871

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.