Evidence map›Paper›PMID 16254142›Full record

ArticleBlood2006

Zebrafish to humans: evolution of the alpha3-chain of type IV collagen and emergence of the autoimmune epitopes associated with Goodpasture syndrome.

Brian A MacDonald, Malin Sund, Marianne A Grant, Kathleen L Pfaff, Kathryn Holthaus, Leonard I Zon, Raghu Kalluri

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.7field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 32 citations in OpenAlex.

  1. Identification of unique α4 chain structure and conserved antiangiogenic activity of α3NC1 type IV collagen in zebrafish.Developmental dynamics : an official publication of the American Association of Anatomists · 2023
    Article
  2. Article
  3. Article
  4. Article
  5. On the Evolution of the Mammalian Brain.Frontiers in systems neuroscience · 2016
    Article
  6. Article
  7. Evolution and Cell Physiology. 1. Cell signaling is all of biology.American journal of physiology. Cell physiology · 2013
    Review
  8. Review
  9. A cell-molecular approach predicts vertebrate evolution.Molecular biology and evolution · 2011
    Article
  10. Article
  11. Lung evolution as a cipher for physiology.Physiological genomics · 2009
    Review
  12. Article
  13. On the evolution of development.Trends in developmental biology
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Brian A MacDonaldCenter for Matrix Biology, Boston, MA, USA.
Malin Sund
Marianne A Grant
Kathleen L Pfaff
Kathryn Holthaus
Leonard I Zon
Raghu Kalluri
Dana-Farber Cancer Institute · US

Funding

Regulation of Angiogenesis by TumstatinR01DK062987 · NIDDK · BETH ISRAEL DEACONESS MEDICAL CENTER · PI KALLURI, RAGHU · 2003 to 2006
$1.4M
NIDDK NIH HHS DK55001NIDDK NIH HHS DK62987
6 · The paper itself

Abstract

Goodpasture syndrome is an autoimmune vascular disease associated with kidney and lung failure, with pathogenic circulating autoantibodies targeted to a set of discontinuous epitope sequences within the noncollagenous domain-1 (NC1) of the alpha3 chain of type IV collagen (alpha3(IV)NC1), the Goodpasture autoantigen. We demonstrate that basement membrane extracted NC1 domain preparations from Caenorhabditis elegans, Drosophila melanogaster, and Danio rerio do not bind Goodpasture autoantibodies, while Xenopus laevis, chicken, mouse and human alpha3(IV)NC1 domains bind autoantibodies. The alpha3(IV) chain is not present in C elegans and Drosophila melanogaster, but is first detected in the Danio rerio. Interestingly, native Danio rerio alpha3(IV)NC1 does not bind Goodpasture autoantibodies. Next, we cloned, sequenced, and generated recombinant Danio rerio alpha3(IV)NC1 domain. In contrast to recombinant human alpha3(IV)NC1 domain, there was complete absence of autoantibody binding to recombinant Danio rerio alpha3(IV)NC1. Three-dimensional molecular modeling from existing x-ray coordinates of human NC1 domain suggest that evolutionary alteration of electrostatic charge and polarity due to the emergence of critical serine, aspartic acid, and lysine residues, accompanied by the loss of asparagine and glutamine, contributes to the emergence of the 2 major Goodpasture epitopes on the human alpha3(IV)NC1 domain, as it evolved from the Danio rerio over 450 million years.

Indexed as

Evolution, MolecularAnimalsAntibody SpecificityAnti-Glomerular Basement Membrane DiseaseAutoantibodiesAutoantigensCollagen Type IVEpitope MappingEpitopesHumansMiceSequence Homology, Amino AcidSpecies SpecificityStructural Homology, ProteinZebrafishAutoantibodiesAutoantigensCollagen Type IVEpitopes

Identifiers

PMID16254142
PMCPMC1895704
OpenAlexW2062487971

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.